Abhimanyu Singh
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Installing Salmon for Trinity !
By Rahul Nayak 2337 days ago Comments (1)Installing Trinity dependencies !
List of non-commercial NGS genotype-calling software
Last updated 2300 days ago by Jit Comments (1)Meaningful analysis of next-generation sequencing (NGS) data, which are produced extensively by genetics and genomics studies, relies crucially on the accurate calling of SNPs and genotypes. Recently developed statistical methods both improve and...AMStat: display statistics of large sequence files from next generation sequencing projects
By Neel 2208 days agosamstat.sourceforge.net - SAMStat is an efficient C program to quickly display statistics of large sequence files from next generation sequencing projects. When applied to SAM/BAM files all statistics are reported for unmapped, poorly and accurately mapped reads...Introduction to Bioinformatics
By eliabrodsky 2000 days agoLearn about bioinformatics online by watching videos, reading engaging articles and practicing bioinformatics skills using public domain datasets.-
Bioinformatics Services / CRO Services
Last updated 1846 days ago by RASA Life SciencesRASA is set to provide premium technical and scientific services in a form of solutions, product development and training. .We are also very proficient in providing the high quality Research & Development services in life science informatics... LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
By BioStar 1742 days agocsb5.github.io - LoFreq* (i.e. LoFreq version 2) is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-call qualities and other sources of errors inherent in sequencing (e.g. mapping or...FiNGS: Filters for Next Generation Sequencing
By Neel 1367 days agogithub.com - Key features Filters SNVs from any variant caller to remove false positives Calculates metrics based on BAM files and provides filtering not possible with other tools Fully user-configurable filtering (including which filters to use and their...-
Libraries or management tools for high throughput sequencing data
Last updated 52 days ago by LEGEGATB Library. The Genome Analysis Toolbox with de-Bruijn graph. A large part of tools developed by the GenScale team are based on this library.These methods enable the analysis of data sets of any size on multi-core desktop... VariantBam: Filtering and profiling of next-generational sequencing data using region-specific rules
By Rahul Nayak 2244 days agogithub.com - VariantBam is a tool to extract/count specific sets of sequencing reads from next-generational sequencing files. To save money, disk space and I/O, one may not want to store an entire BAM on disk. In many cases, it would be more efficient to store...ngs-bits - Short-read sequencing tools
By Neel 1774 days agogithub.com - Binaries of ngs-bits are available via Bioconda. Alternatively, ngs-bits can be built from sources: Binaries for Linux/macOS From sources for Linux/macOS From sources for Windows
