Rahul Nayak
A Bioinformatician
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By Rahul Nayak 1757 days agosysomics.com - DeepHiC is a GAN-based model for enhancing Hi-C data resolution. We developed this server for helping researchers to enhance their own low-resolution data by a few steps of clicks. Ab initio training could be performed according to our published...Reference Sequence Resource!
By LEGE 1195 days agowww.encodeproject.org - The ENCODE project uses Reference Genomes from NCBI or UCSC to provide a consistent framework for mapping high-throughput sequencing data. In general, ENCODE data are mapped consistently to 2 human (GRCH38, hg19) and 2 mouse...mafTools
By Radha Agarkar 3138 days agogithub.com - Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.Mercator: Multiple Whole-Genome Orthology Map Construction
By Jit 1679 days agowww.biostat.wisc.edu - Whole-genome homology maps attempt to identify the evolutionary relationships between and within multiple genomes. The term "syntenic" is often used to describe regions of multiple genomes that are believed to have evolved from the same region in an...GRSR: a tool for deriving genome rearrangement scenarios from multiple unichromosomal genome...
By Jit 2278 days agogithub.com - GRSR is a Tool for Deriving Genome Rearrangement Scenarios for Multiple Uni-chromosomal Genomes. This tool will do the following steps: Step 1. Run mugsy to get multiple sequence alignment results. Step 2 & 3. Extraction of the Coordinates...Cactus: a reference-free whole-genome multiple alignment program
By Jit 1960 days agogithub.com - Cactus is a reference-free whole-genome multiple alignment program. The principal algorithms are described here: https://doi.org/10.1101/gr.123356.111 Cactus uses substantial resources. For primate-sized genomes (3 gigabases each), you should...SVbyEye: R Package to visualize alignments between two or multiple DNA sequences
By LEGE 98 days agogithub.com - R Package to visualize alignments between two or multiple DNA sequences includinga number of functionalities to facilitate processing of alignments in PAF format. SVbyEye, an open-source R package to visualize and annotate sequence-to-sequence...NGS course Medical Genomics, scheduled for 17-20 September 2013 in UZ Leuven (Belgium).
By Poonam Mahapatra 4151 days agoThe 4-day course is organized as a series of morning lectures and afternoon hands-on workshops.
