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A guide for complete R beginners :- Installing R packages
Last updated 4029 days ago by Archana MalhotraPart of the reason R has become so popular is the vast array of packages available at the cran and bioconductor repositories. In the last few years, the number of packages has grown exponentially! This is a short post giving steps on how to...
Linux Cheat Sheet
By Jitendra Narayan 4624 days ago Comments (2)In an attempt to find a good Linux reference for bioinformatician and BOL readers, I was unsuccessful at finding a decent one on the Internet. So, we decided to make a cheat sheet for biological programmers.-
Linux SSH Client Commands for Bioinformatics
Last updated 4377 days ago by Rahul NayakHere come on let play with the following basic command line usage of the ssh client.1. Check your SSH Client Version:Checking for your SSH client is very sare, but sometimes it may be necessary to identify the SSH client that you are currently... -
Find certain files/documents in Linux OS
Last updated 4353 days ago by Rahul NayakAs bioinformatician I know the fact that we usually handle the large dataset and lost in the huge numbers of files and folders. In order to search the missing file a strong search command is required. The Linux Find Command is one of the most... -
Search Shell Command History
Last updated 4286 days ago by Rahul NayakWe use couple of hundreads of command in daily basis. Most of them are actually repeated several time. The question remain open how do I search old command history under bash shell and modify or reuse it? Now a days almost all modern shell allows... -
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
Last updated 2952 days ago by Rahul NayakThe purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequently used tools for NGS analysis as well as giving experience in writing one-liners. File System ls — list items in current directory ls... -
Subprocess pkg
Last updated 4221 days ago by Rahul AgarwalSubprocess is one of simplest way of running linux command from within python code Example: if you want to run fastqc for QC of fastq file: from subprocess import Popen,PIPE,call p=Popen(["fastqc","-f","fastq","-o",... Five points for bioinformatics software/tools
By Jitendra Narayan 4598 days ago Comments (1)Some five points to keep in mind for bioinformatics software/toolsSoftware developed in pevsner lab
By Robert M Willioms 4171 days agopevsnerlab.kennedykrieger.org - DRAGON: Database Referencing of Array Genes Online SNOMAD: Standardization and Normalization of Microarray Data SNPduo: SNP Analysis Between Two Individuals SNPtrio: Analyzing and Visualizing and Inheritance Patterns in Trios SNPscan: Data...BioinfoLab
Laboratory of Statistics and Computational tools for Bioinformatics The Laboratory of Statistics and Computational tools for Bioinformatics (BioinfoLab) is hosted at the Istituto per le Applicazioni del Calcolo "Mauro Picone" - CNR . The...
