Poonam Mahapatra
Bioinformatics Researcher
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By Jit 3190 days agogithub.com - BEDOPS v2.4.26 is a suite of tools to address common questions raised in genomic studies — mostly with regard to overlap and proximity relationships between data sets. It aims to be scalable and flexible, facilitating the efficient and...MGcV: the microbial genomic context viewer for comparative genome analysis
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By Neel 2825 days agogithub.com - RestrictionDigest can simulate the reference genome digestion and generate comprehensive information of the simulation. It can simulate single-enzyme digestion, double-enzyme digestion and size selection process. It can also analyze multiple genomes...regioneR: an R package for the management and comparison of genomic regions
By Jit 2643 days agogattaca.imppc.org - Regioner is an R package for the management and comparison of genomic regions. It offers a set of function for basic manipulation of region sets extending the functionality of GenomicRanges and a powerful and customizable permutation test framework....Apollo: First instantaneous, collaborative genomic annotation editor available on the Web
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By BioStar 578 days agoforgemia.inra.fr - Tool for graphical vizualisation of annotated genetic regions, and homologous regions comparison. It is an independent recoding of Easyfig 2 initially developped by at the S. Beatson Lab [https://mjsull.github.io/Easyfig/] Download the GenoFig...RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
By Jit 3022 days agokiwi.cs.dal.ca - RITA is a standalone software package and Web server for taxonomic assignment of metagenomic sequence reads. By combining homology predictions from BLAST or UBLAST with compositional classifications from a Naive Bayes classifier, RITA is able to...ITIS: the Integrated Taxonomic Information System!
By Jit 2380 days agohttps://www.itis.gov/ - ITIS, the Integrated Taxonomic Information System! Here you will find authoritative taxonomic information on plants, animals, fungi, and microbes of North America and the world. We are a partnership of U.S., Canadian,...
