Jit
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GenomeMapper: Simultaneous alignment of short reads against multiple genomes
By Jit 2844 days ago1001genomes.org - GenomeMapper is a short read mapping tool designed for accurate read alignments. It quickly aligns millions of reads either with ungapped or gapped alignments. It can be used to align against multiple genomes simulanteously or against a single...Essentials of Statistics and Data Analysis using R
Clinical Development Services Agency (CDSA) is an extramural unit of Translational Health Science and Technology Institute (THSTI), Department of Biotechnology, Ministry of Science & Technology, Government of India. CDSA has a national mandate...ReMILO: reference assisted misassembly detection algorithm using short and long reads.
By Jit 2802 days agogithub.com - ReMILO, a reference assisted misassembly detection algorithm that uses both short reads and PacBio SMRT long reads. ReMILO aligns the initial short reads to both the contigs and reference genome, and then constructs a novel data structure called...SimLoRD: A read simulator for third generation sequencing reads
By Aaryan Lokwani 2755 days agobitbucket.org - SimLoRD is a read simulator for third generation sequencing reads and is currently focused on the Pacific Biosciences SMRT error model. Reads are simulated from both strands of a provided or randomly generated reference sequence. The reference...MetaPred2CS
By Manisha Mishra 3292 days agogithub.com - MetaPred2CS Web server is a meta-predictor based on Support Vector Machine (SVM) that combines 6 individual sequence based protein-protein interaction prediction methods to predict prokaryotic two-component...PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the...
By BioStar 2725 days agogithub.com - Development packages for zlib and libbz2 are needed, as well as a standard compiler environment. On Ubuntu, this can be installed via: sudo apt-get install build-essential libtool automake zlib1g-dev libbz2-dev pkg-config On MacOS, the Apple...Bioinformatics Faculty at BHARATHIDASAN UNIVERSITY
BHARATHIDASAN UNIVERSITY (Reaccredited by NAAC with ‘A’ grade) TIRUCHIRAPPALLI - 620 024 I N V I T E S APPLICATIONS FOR FACULTY POSITIONS UNDER UGC XII PLAN CREATED POSTS ON CONTRACTUAL BASIS TILL 31.03.2017 IN THE FOLLOWING UNIVERSITY...wtdbg2: A fuzzy Bruijn graph approach to long noisy reads assembly
By BioStar 2589 days agogithub.com - Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly...R.A Bioinformatics at JNU, Delhi
R.A Jobs opportunity in Jawaharlal Nehru University (JNU) on purely temporary basis Project Title : "Structural and functional characterization of serine biosynthetic pathway enzymes from Entamoeba histolytica" No. of Post :...FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
By Jit 2231 days agobioinfo.ut.ee - FastGT is a program package for whole-genome genotyping of genome variants directly from raw sequencing reads. It is written in C and runs in Linux. FastGT uses a list of variant-specific k-mer pairs that are unique in human genome, counts the...
