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SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
By BioStar 825 days agogithub.com - SqueezeMeta is a full automatic pipeline for metagenomics/metatranscriptomics, covering all steps of the analysis. SqueezeMeta includes multi-metagenome support allowing the co-assembly of related metagenomes and the retrieval of individual genomes...NxRepair: error correction in de novo assemblies using Nextera Mate Pair Reads
By BioStar 2815 days agogithub.com - NxRepair is a python module that automatically detects large structural errors in de novo assemblies using Nextera mate pair reads. The decector will break a contig at the site of an identified misassembly and will generate a new fasta file...Research Scientist at IIT Madras
Research Scientist/Project Associate/Project Assistant Jobs opportunity in Indian Institute of Technology Madras (IIT Madras) Research Scientist Qualification : Ph.D in any branch of life science or bioinformatics or computational biology...Trust But Verify: Sequencing Your Cell Lines Might Reveal an Uninvited Guest
By LEGE 493 days agoHigh-throughput sequencing has become indispensable in cell biology, enabling detailed insights into chromatin structure, gene expression, and regulatory dynamics. Yet, when faced with unexpectedly low mapping rates to the human genome,...Research Fellow Bioinformatics at Central University of Rajasthan
Research Fellow Bioinformatics Eligibility : MSc(Bio-Chemistry, Bio-Informatics, Bio-Tech) Location : Ajmer Last Date : 13 Feb 2016 Hiring Process : Face to Face Interview Central University of Rajasthan Research Fellow Job vacancies in...GTDB-Tk: A toolkit for assigning objective taxonomic classifications to bacterial and archaeal...
By Rahul Nayak 2970 days agogithub.com - GTDB-Tk is a software toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. It is computationally efficient and designed to work with recent advances that allow hundreds or thousands of metagenome-assembled...ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis
By Jit 2396 days agogithub.com - ProteoClade is a Python library for taxonomic-based annotation and quantification of bottom-up proteomics data. It is designed to be user-friendly, and has been optimized for speed and storage requirements. ProteoClade helps you analyze two...RA at Central University of Rajasthan
Research Fellow Bioinformatics Eligibility : MSc(Bio-Chemistry, Bio-Informatics, Bio-Tech) Location : Ajmer Last Date : 13 Feb 2016 Hiring Process : Face to Face Interview Central University of Rajasthan Research Fellow Job vacancies...NCBI Remap
By Jit 3893 days agowww.ncbi.nlm.nih.gov - NCBI Remap. This tool is conceptually similar to liftOver in that in manages conversions between a pair of genome assemblies but it uses different methods to achieve these mappings. It is also available through a simple web interface or you can use...Przeworski lab
Genetic differences among individuals reflect the combined effects of mutation, recombination, population history and natural selection. As a result, studies of natural variation can provide important insights into evolutionary and genetic...
