Jit
Enthusiast computational biologist with business dream !!!
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Understanding kmer !
By BioStar 1664 days agobioinfologics.github.io - What is a k-mer anyway? A k-mer is just a sequence of k characters in a string (or nucleotides in a DNA sequence). Now, it is important to remember that to get all k-mers from a sequence you need to get...ncbi-datasets-cli -- Quickstart: command line tools !
By Jit 1553 days ago Comments (1)www.ncbi.nlm.nih.gov - Install and use the NCBI Datasets command line tools The NCBI Datasets datasets command line tools are datasets and dataformat . Use datasets to download biological sequence data across all domains of life from...Monkeypox virus isolate MPXV_USA_2022_MA001, complete genome
By Jit 1322 days agowww.ncbi.nlm.nih.gov - LOCUS ON563414 197205 bp DNA linear VRL 30-MAY-2022 DEFINITION Monkeypox virus isolate MPXV_USA_2022_MA001, complete genome. ACCESSION ON563414 VERSION ON563414.3 KEYWORDS . SOURCE Monkeypox virus...bacLIFE: an automated genome mining tool for identification of lifestyle associated genes
By BioStar 724 days agogithub.com - bacLIFE is a streamlined computational workflow that annotates bacterial genomes and performs large-scale comparative genomics to predict bacterial lifestyles and to pinpoint candidate genes, denominated lifestyle-associated genes (LAGs), and...
Is reference genome necessary for gene expression study in transcriptome sequencing or for variant discovery in genome sequencing?
Rahul Agarwal 4618 days ago320000 viruses in mammals yet to sequenced in future!!!
By Rahul Agarwal 4570 days ago70 per cent of emerging viral diseases such as HIV/AIDS, West Nile, Ebola, SARS, and influenza, are zoonoses - infections of animals that cross into humans.Tools to detect synteny blocks regions among multiple genomes
By Jitendra Narayan 4557 days ago Comments (24)Collections of synteny detection tools and related materialsMedGenome is looking for Genome Analysts
MedGenome is looking for Genome Analysts (5-6 Positions), ambitious and energetic who will work both independently and as part of a collaborative team to generate data from various genomics-oriented workflows and assist in the optimization and...
Perl one-liner for bioinformatician !!!
Last updated 4301 days ago by Abhimanyu Singh Comments (3)With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and wrangle around massive amounts of genomics text. There are several "standardized" file formats (FASTQ, SAM, VCF, etc.) and some tools for manipulating...Swabs to Genomes: A Comprehensive Workflow
By Rahul Nayak 4229 days agopeerj.com - The sequencing, assembly, and basic analysis of microbial genomes, once a painstaking and expensive undertaking, has become almost trivial for research labs with access to standard molecular biology and computational tools. However, there are a wide...
