Jit
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KOBAS: a web server for gene/protein functional annotation and functional gene set enrichment
By Jit 2909 days agokobas.cbi.pku.edu.cn - KOBAS 3.0 is a web server for gene/protein functional annotation (Annotate module) and functional gene set enrichment(Enrichment module). For Annotate module, it accepts gene list as input, including IDs or sequences, and generates annotations...plumber:An R package that converts your existing R code to a web API
By BioJoker 2764 days agohttps://www.rplumber.io/ - plumber allows you to create a REST API by merely decorating your existing R source code with special comments. Take a look at an example. # plumber.R #* Echo back the input #* @param msg The message to echo #* @get /echo function(msg=""){...DMINDA2: an integrated web server for DNA motif identification and analyses
By BioStar 2438 days agobmbl.sdstate.edu - DMINDA (DNA motif identification and analyses) is an integrated web server for DNA motif identification and analyses More at http://bmbl.sdstate.edu/DMINDA2/ https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4086085/NCBI BLAST have added new columns to the Descriptions
By Neel 2135 days agoNCBI BLAST have added new columns to the Descriptions Table for web BLAST output.Web Apollo: a web-based genomic annotation editing platform
By Jit 3357 days agogenomearchitect.github.io - Web Apollo is the first instantaneous, collaborative genomic annotation editor available on the web. One of the natural consequences following from current advances in sequencing technology is that there are more and more researchers sequencing new...Apollo: First instantaneous, collaborative genomic annotation editor available on the Web
By Jit 2685 days agogenomearchitect.github.io - Apollo is a plug-in for the JBrowse Genome Viewer. In addition to genes and pseudogenes, users can annotate ncRNAs (snRNA, snoRNA, tRNA, rRNA), miRNAs, repeat regions, and transposable elements; each annotation type has its own...Lifemap
By Jit 3466 days agolifemap-ncbi.univ-lyon1.fr - Lifemap is an interactive tool to explore the WHOLE NCBI TAXONOMY. The concept used in Lifemap is similar to the one used in cartography with tools like Google Maps© or Open Street Maps: exploring is done by zooming and panning. The...Dot, an interactive viewer for genome-genome comparison
By Jit 3187 days agogithub.com - Dot, an interactive dot plot viewer that allows genome scientists to visualize genome-genome alignments in order to evaluate new assemblies and perform exploratory comparative genomics. Dot supports the output of MUMmer’s nucmer aligner...S-plot2: creates an interactive, two-dimensional heatmap of sequences
By Jit 2930 days agobitbucket.org - S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities and dissimilarities in nucleotide usage between genomic sequences (partial or complete). In S-plot2, whole eukaryotic chromosomes and smaller prokaryotic genomes can...dotPlotly: Generate an interactive dot plot from mummer or minimap alignments
By Rahul Nayak 2784 days agogithub.com - Create an interactive dot plot from mummer output OR PAF format R script that makes a plotly interactive and/or static (png/pdf) dot plot. Shiny app available for testing
