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Figeno: Tool for plotting sequencing data along genomic coordinates.
By LEGE 203 days agogithub.com - Tool for plotting sequencing data along genomic coordinates. FIGENO is a FIGure GENerator for GENOmics With figeno, you can plot various types of sequencing data along genomic coordinates. Video...lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data
By BioJoker 2324 days agogithub.com - lordFAST is a sensitive tool for mapping long reads with high error rates. lordFAST is specially designed for aligning reads from PacBio sequencing technology but provides the user the ability to change alignment parameters depending on the reads...Ancestral sequence reconstruction (ASR) or ancestral gene/sequence reconstruction/resurrection...
By Jit 2870 days ago Comments (2)Ancestral sequence reconstruction (ASR) – also known as ancestral gene/sequence reconstruction/resurrection – is a technique used in the study of molecular evolutioniRNAD: a computational tool for identifying D modification sites in RNA sequence
By Abhimanyu Singh 2154 days agolin-group.cn - iRNAD, for identifying D modification sites in RNA sequence. In this predictor, the RNA samples derived from five species were encoded by nucleotide chemical property and nucleotide density. Support vector machine was utilized to perform the...LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
By BioStar 1876 days agocsb5.github.io - LoFreq* (i.e. LoFreq version 2) is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-call qualities and other sources of errors inherent in sequencing (e.g. mapping or...Submit your SARS-CoV-2 sequence data to GenBank
By Neel 1825 days agoSubmit your SARS-CoV-2 sequence data to GenBank and SRA with our new submission landing page.PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
By Jit 2685 days agohttps://plast.inria.fr/ - PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accelerations of seeds-based heuristic comparison methods, such as the Blast suite of algorithms. Relying on unique software architecture,...A web-based tool for sequence alignment statistics and innovative visualization
By BioStar 369 days agobioinformatics.um6p.ma - AlignStatPlot, a new R package and online tool that is well-documented and easy-to usefor MSA and post-MSA analysis. This tool performs both traditional and cutting-edge analy-ses on sequencing data and generates new visualisation methods for MSA...SMASH: An alignment-free tool to find and visualise rearrangements between pairs of DNA sequences
By Jit 2665 days agogithub.com - SMASH is a completely alignment-free method to find and visualise rearrangements between pairs of DNA sequences. The detection is based on relative compression, namely using a FCM, also known as Markov model, of high context order (typically...Scripts for the analysis of HGT in genome sequence data.
By Jit 2687 days agogithub.com - Scripts for the analysis of HGT in genome sequence data
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