www.mrc-lmb.cam.ac.uk - This is about how to use a computer to find what is known about a gene of interest and also how to get new insights about it.
The tutorial is divided in three main parts:
In the Sequence part, you will see how to look efficiently for a...
http://sandbox.bio - Learn how to use bioinformatics tools right from your browser.Everything runs in a sandbox, so you can experiment all you want.
More at sandbox.bio
github.com - Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION). The software is currently alpha level, feel free to use and report issues encountered.
Canu is...
www.broadinstitute.org - The Genome Assembly Evaluation Metrics and Reporting (GAEMR) package is an assembly analysis framework composed a number of integrated modules. These modules can be executed as a single program to generate a complete...
http://prodigal.ornl.gov/ - Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program developed at Oak Ridge National Laboratory and the University of Tennessee. Key features of Prodigal...
github.com - A tool for converting for recovering synteny blocks from multiple alignment (in MAF fromat)
This tool is a standalone version of Ragout module [http://fenderglass.github./Ragout]
www.ncbi.nlm.nih.gov - HGT-Finder:
(i) can be used for HGT detection in both prokaryotes and eukaryotes,
(ii) can report a statistical P value for each gene to indicate how likely it is to be horizontally transferred, and
(iii) is fully automated (requires...