Rahul Nayak
A Bioinformatician
Our Sponsors
Related items
Wtdbg2: a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore
By Neel 2850 days agogithub.com - Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output. Wtdbg2...FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
By Jit 2384 days agobioinfo.ut.ee - FastGT is a program package for whole-genome genotyping of genome variants directly from raw sequencing reads. It is written in C and runs in Linux. FastGT uses a list of variant-specific k-mer pairs that are unique in human genome, counts the...Filtlong: quality filtering tool for long reads
By Radha Agarkar 2278 days agogithub.com - Filtlong is a tool for filtering long reads by quality. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the...Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
By Jit 2053 days agogithub.com - Hifiasm is a fast haplotype-resolved de novo assembler for PacBio Hifi reads. It can assemble a human genome in several hours and works with the California redwood genome, one of the most complex genomes sequenced so far. Hifiasm can produce...Bioinformatics tools for telomere to telomere assembly !
By BioStar 1817 days agooptimize HiFi readsLoRMA: a tool for correcting sequencing errors in long reads such those produced by Pacific...
By Jit 3706 days agowww.cs.helsinki.fi - LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences sequencing machines. Publication: L. Salmela, R. Walve, E. Rivals, and E. Ukkonen: Accurate selfcorrection of errors in long reads using de...Jabba: Hybrid Error Correction for Long Sequencing Reads
By Jit 3137 days agogithub.com - Jabba is a hybrid error correction tool to correct third generation (PacBio / ONT) sequencing data, using second generation (Illumina) data. Input Jabba takes as input a concatenated de Bruijn graph and a set of sequences: the de Bruijn graph...Trust But Verify: Sequencing Your Cell Lines Might Reveal an Uninvited Guest
By LEGE 430 days agoHigh-throughput sequencing has become indispensable in cell biology, enabling detailed insights into chromatin structure, gene expression, and regulatory dynamics. Yet, when faced with unexpectedly low mapping rates to the human genome,...Added video feature in BOL
By Jitendra Narayan 4743 days agoShare and watch your favourite bioinformatics training, lecture, tutorial video on BOLPerl and BioPerl Tutorials
By Jitendra Narayan 4728 days ago Comments (27)cbb.sjtu.edu.cn - This bookmark is created to store the useful Perl and BioPerl tutorial links at one place. Feel free to share and add more useful tutorial links here ....
