Rahul Nayak
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Software and Tools to detect structure variation with long reads !!
By Archana Malhotra 3494 days agoStructural variation caller tools using long readsSalzberg lab
We are a computational biology lab that develops novel methods for analysis of DNA and RNA sequences. Our research includes software for aligning and assembling RNA-seq data, whole-genome assembly, and microbiome analysis. We work closely with...
IUPAC codes
Last updated 3131 days ago by NeelIUPAC codes DNA: Nucleotide Code: Base: ---------------- ----- A.................Adenine C.................Cytosine G.................Guanine T (or U)..........Thymine (or Uracil) R.................A or G Y.................C or...The El-Sherif Group, Chair of Developmental Biology, Department of Biology - PhD Position
El-Sherif lab studies how genes are regulated to mediate patterning in Development. We use live and super-resolution imaging in addition to computational modeling to understand transcription dynamics at the single-cell level in three model systems:...Kmer: a suite of tools for DNA sequence analysis
By BioStar 1878 days agohelp.rc.ufl.edu - More at https://help.rc.ufl.edu/doc/Kmer This also includes: A2Amapper: ATAC, Assembly to Assembly Comparision tool: Comparative mapping between two genome assemblies (same species), or between two different genomes (cross...MetaGraph: Ultra Scalable Framework for DNA Search, Alignment, Assembly
By Abhi 852 days agometagraph.ethz.ch - The MetaGraph framework is designed to work with a wide range of input data sets, indexing from a few samples up to the contents of entire archives with hundreds of thousands of records. The indexing workflow always follows the same principle,...DNA in Pieces, Survival in Progress: The Rotifer’s Incredible Secret
By Jitendra Narayan 20 days agoA creature smaller than a grain of sand has discovered a surprising method of surviving damage that can break its DNA apart. It lives in the mosses and lichens, in the thin films of water that show up after rain and disappear when the area dries...-
Tools for Searching Repeats And Palindromic Sequences
Last updated 3097 days ago by Poonam Mahapatra Comments (2)What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociation Kinetics Experiments, and C-Value Paradox ). These sequences were later... gVolante: Completeness Assessment of Genome/Transcriptome Sequences
By Jit 2620 days agogvolante.riken.jp - gVolante provides an online interface for completeness assessment of user’s original or publicly available sequence datasets as well as for browsing results of completeness assessment performed on publicly available genome and...
