Abhimanyu Singh
A bioinformatics beginner
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chromosight: Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
By Jit 2177 days agogithub.com - Python package to detect chromatin loops (and other patterns) in Hi-C contact maps. Stable version with pip: pip3 install --user chromosight Stable version with conda: conda install -c bioconda -c conda-forge chromosight or, if you want...Creating Genetic Maps from GBS data
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By Jit 2894 days agochristophergandrud.github.io - You can also create Sankey diagrams with sankeyNetwork. Here is an example using downloaded JSON data: https://en.wikipedia.org/wiki/Sankey_diagramdotPlotly: Generate an interactive dot plot from mummer or minimap alignments
By Rahul Nayak 2573 days agogithub.com - Create an interactive dot plot from mummer output OR PAF format R script that makes a plotly interactive and/or static (png/pdf) dot plot. Shiny app available for testingk-mers tutorial - classification and taxonomy
By Neel 1656 days agoivory.idyll.org - DNA k-mers underlie much of our assembly work, and we (along with many others!) have spent a lot of time thinking about how to store k-mer graphs efficiently, discard redundant data, and count them efficiently. More recently, we've...ICAR project RA position @ Institute of Bioinformatics (IOB) Bangalore
Applications are invited for the post of Research Associate (RA) in the ICAR project on "Lactation stress associated postpartum anestrus SNP array in buffaloes". We are looking for a motivated candidate for handling Next Generation sequencing data...Fools guide
By Poonam Mahapatra 3263 days agosfg.stanford.edu - This website and accompaning documents are intended as a tool to help researchers dealing with non-model organisms acquire and process transcriptomic high-throughput sequencing data without having to learn extensive bioinformatics skills. It covers...Kubeflow: an open, community driven project to make it easy to deploy and manage an ML stack on...
By BioStar 2670 days agohttps://www.kubeflow.org/ - The Kubeflow project is dedicated to making deployments of machine learning (ML) workflows on Kubernetes simple, portable and scalable. Our goal is not to recreate other services, but to provide a straightforward way to deploy best-of-breed...
