Abhimanyu Singh
A bioinformatics beginner
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KOALA: KEGG's internal annotation tool for K number assignment of KEGG GENES using SSEARCH...
By Abhimanyu Singh 2202 days agowww.kegg.jp - KOALA (KEGG Orthology And Links Annotation) is KEGG's internal annotation tool for K number assignment of KEGG GENES using SSEARCH computation. BlastKOALA and GhostKOALA assign K numbers to the user's sequence data...Greengenes database
By Jit 3098 days agogreengenes.lbl.gov - The greengenes web application provides access to the 2011 version of the greengenes 16S rRNA gene sequence alignment for browsing, blasting, probing, and downloading. The data and tools presented by greengenes can assist the researcher in choosing...CGView - Circular Genome Viewer
By Rahul Nayak 2377 days agowishart.biology.ualberta.ca - CGView is a Java package for generating high quality, zoomable maps of circular genomes. Its primary purpose is to serve as a component of sequence annotation pipelines, as a means of generating visual output suitable for the web. Feature...Proksee
By LEGE 270 days agohttps://proksee.ca/ - Proksee is an expert system for genome assembly, annotation and visualization. To begin using Proksee, provide a complete genome sequence, sequencing reads or a CGView/Proksee map JSON file. Please Cite the Following Grant JR, Enns E, Marinier E,...Gupta Lab
Work include (i) understanding the evolutionary relationships among different prokaryotic and eukaryotic organisms; (ii) Understanding the cellular functions of these lineage-specific signature proteins as well as lineage-specific conserved inserts...
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
Last updated 3103 days ago by EagleEye----------- Gene Set Clustering based on Functional annotation GeneSCF serves as command line tool for clustering the list of genes given by the users based on functional annotation (Gene Ontology, KEGG, REACTOME and NCG...NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
By Jit 2433 days ago Comments (1)github.com - CoNvex Gap-cost alignMents for Long Reads (ngmlr) is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to quickly and correctly align the reads, including those spanning...RNA-Seq Data Pathway and Gene-set Analysis Workflows
By Jit 4076 days agoDescribe the GAGE workflows on RNA-Seq data pathway analysis and gene-set analysis.PANEV: an R package for a pathway-based network visualization
By Jit 1778 days agogithub.com - PANEV (PAthway NEtwork Visualizer) is an R package set for gene/pathway-based network visualization. Based on information available on KEGG, it visualizes genes within a network of multiple levels (from 1 to n) of interconnected upstream and...
