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World of Omics
By Rahul Agarwal 4149 days ago Comments (5)How many variants of "omics" techniques presently in use ?Research Associate (RA) at IOB
Applications are invited for a post of Research Associate (RA) or Senior Research Fellow (SRF) in the ICMR project on "Integrated Analysis of Multi-omics Data in Human Gliomas". We are looking for a motivated candidate for handling proteomic...MIRO : miRNA omics
By Jit 2973 days agoseq.crg.es - The MIRO (the miRNA omics) pipeline is a flexible and powerful tool for the analysis of miRNA (or more generall short RNA) expression using short-read deep sequencing data. In its present implementation MIRO is especially adapted for the analysis of...Japanese Multi Omics Reference Panel, jMorp
By Rahul Agarwal 2529 days agojmorp.megabank.tohoku.ac.jp - Japanese Multi Omics Reference Panel, jMorp, is a database of metabolome and proteome data in plasma obtained from volunteers in ToMMo. Metabolome data were measured by proton NMR and LC-MS, and proteome data were obtained by nanoLC-MS. We could...Drawback of Exome Sequencing
By Rahul Agarwal 3828 days agoSmaller Exome datasets were found to be worse performer than those from larger datasets (WGS)Mesquite: A modular system for evolutionary analysis
By Rahul Nayak 2686 days agogithub.com - Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of its modules concern population genetics,...CLARK: Fast, accurate and versatile sequence classification system
By Jit 1744 days agoclark.cs.ucr.edu - CLARK, a method based on a supervised sequence classification using discriminative k-mers. Considering two distinct specific classification problems (see the article for details), namely (1) the taxonomic classification of metagenomic reads to...SIMBA: a Genome Assembly Project Management System
By Neel 2187 days agoufmg-simba.sourceforge.net - SIMBA, SImple Manager for Bacterial Assemblies, is a Web interface for managing assembly projects of bacterial genomes. SIMBA was created to assist bioinformaticians to assemble bacterial genomes sequenced with NextGeneration Sequencing (NGS)...Des Higgins: Visualizing Multiple Sequence Alignments
By Shruti Paniwala 3925 days agoCopyright Broad Institute, 2013. All rights reserved. Des Higgins (http://www.bioinf.ucd.ie) gives a very entertaining introduction to the visualization of multiple sequence alignment, and to his widely-used Clustal tool. He highlights the emerging...deepTools
By Martin Jones 3669 days agoUser-friendly tools for the normalization and visualization of deep-sequencing data
