Jit
Enthusiast computational biologist with business dream !!!
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Should you get sequenced? Not all bad genes predict disease
By Rahul Agarwal 4573 days agowww.today.com - “What we really don’t know yet is whether the predictive aspects of the genome are going to turn out to be beneficial or potentially harmful” “As we roll out genomic medicine we are fighting against this society-wide...alien_index : identify potential contaminants or horizontally transferred genes in transcriptomes.
By Jit 2225 days agogithub.com - identify potential contaminants or horizontally transferred genes in transcriptomes. algorithm is based on alogorithm described in the following: Gladyshev, Eugene A., Matthew Meselson, and Irina R. Arkhipova. "Massive horizontal gene transfer in...DEG 5.0: a database of essential genes in both prokaryotes and eukaryotes
By Rahul Nayak 1803 days agowww.essentialgene.org - Essential genes are those indispensable for the survival of an organism, and their functions are therefore considered a foundation of life. Determination of a minimal gene set needed to sustain a life form, a fundamental question in biology, plays a...Orthoflow: workflow for phylogenetic inference of genome-scale datasets of protein-coding genes
By LEGE 745 days agogithub.com - Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes. Our goal was to make it straightforward to work from a combination of input sources including annotated contigs in Genbank format and FASTA files...33rd Annual Convention of Indian Association for Cancer Research from 13th to 15th February 2014
RGCB is organizing the 33rd Annual Convention of Indian Association for Cancer Research from 13th to 15th February 2014 with the theme "Discovery, Innovation and Translation in Cancer Research" Kindly log on to conference website...clusterProfiler
By Jit 3551 days agowww.bioconductor.org - statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor version: Release (3.3)This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.Author:...DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
By Abhimanyu Singh 3305 days agodagchainer.sourceforge.net - The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGchainer accepts a list of gene pairs with sequence homology along with their genome coordinates. Using a scoring function which accounts...Download mutliple fasta file from NCBI in one GO!!
By Rahul Agarwal 4581 days agoedwards.sdsu.edu - if you have less time, then use three ways mentioned in bookmark link to extract/download all fasta sequences in single click given that you already have a list of GIs or accession IDs . Alternatively, use one liner perl script: perl -ne...PubMed opens for comment
By Rahul Nayak 4517 days agoResearch repository launches comment platform for post-publication peer reviewWebinar: BLAST in the Cloud
By Robert M Willioms 4191 days agoPresented July 30, 2014 and covering: an NCBI BLAST AMI at Amazon Web Services; introduction to AWS and setting up an instance; running command line BLAST and using the BLAST URL API via the AMI; and answers to attendee questions.
