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Kalign: fast multiple sequence alignment program for biological sequences.
By BioStar 2321 days agogithub.com - Kalign is a fast multiple sequence alignment program for biological sequences. Align sequences and output the alignment in MSF format: kalign -i BB11001.tfa -f msf -o out.msf Align sequences and output the alignment in clustal format: kalign...IgBLAST 1.17 is now available with improved identification of productive V gene sequences
By Jit 1954 days agoIgBLAST 1.17 is now available with improved identification of productive V gene sequencesSteps to find palindrome in genomes !
By BioStar 1097 days agoPalindromes are sequences of nucleotides that read the same backward as forward.Jaeger : an accurate and fast deep-learning tool to detect bacteriophage sequences
By Neel 208 days agogithub.com - Jaeger is a tool that utilizes homology-free machine learning to identify phage genome sequences that are hidden within metagenomes. It is capable of detecting both phages and prophages within metagenomic assemblies. The performance of the Jaeger...GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations
By Neel 1391 days agogithub.com - The GenomeQC web application is implemented in R/Shiny version 1.5.9 and Python 3.6 and is freely available at https://genomeqc.maizegdb.org/ under the GPL license. All source code and a containerized version of the GenomeQC pipeline is...SRF Vacancy at NIPGR
Applications are invited from suitable candidates for filling up the purely temporary position of one Senior Research Fellow in DST’s Indo-Australian Joint project (with ICRISAT) entitled “Genomic Approach for Stress Tolerant Chickpea” under the...Genomic Basis of Evolutionary Innovations (GEvol)
By BioStar 94 days agog-evol.uni-muenster.de - The Priority Programme (SPP 2349) funded by German Science Foundation (DFG) started 2022: „Genomic Basis of Evolutionary Innovations (GEvol)“ GEvol is unique as it will use, for the first time, a large taxonomic group to focus on one...Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
By Jit 3029 days agosourceforge.net - Modern genome sequencing strategies are highly sensitive to contamination making the detection of foreign DNA sequences an important part of analysis pipelines. Here we use Taxoblast, a simple pipeline with a graphical user interface, for the...ALPACA: A hybrid strategy for assembly of genomic DNA shotgun sequencing reads.
By Seema Singh 2871 days agogithub.com - ALPACA requires Celera Assembler 8.3 or later. It is recommended to build Celera Assembler from source. (Why? The pre-built binaries CA_8.3rc1 and CA8.3rc2 will work for any large data set. Detail paper...RestrictionDigest: A powerful Perl module for simulating genomic restriction digests
By Neel 2827 days agogithub.com - RestrictionDigest can simulate the reference genome digestion and generate comprehensive information of the simulation. It can simulate single-enzyme digestion, double-enzyme digestion and size selection process. It can also analyze multiple genomes...
