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Scripts for the analysis of HGT in genome sequence data.
By Jit 3022 days agogithub.com - Scripts for the analysis of HGT in genome sequence dataShadowCaster: a hybrid approach for the detection of horizontal gene transfer events in prokaryotes
By Jit 2064 days agogithub.com - ShadowCaster implements an evolutionary model to calculate Bayesian likelihoods for each ‘alien genes’ with an unusual sequence composition according to the host genome background to detect HGT events in...WAAFLE: a Workflow to Annotate Assemblies and Find LGT Events.
By Neel 1628 days agohuttenhower.sph.harvard.edu - Lateral gene transfer (LGT) is an important mechanism for genome diversification in microbial communities, including the human microbiome. While methods exist to identify LGTs from sequenced isolate genomes, identifying LGTs from community...Five unique traits of effective computational biologist
By Jitendra Narayan 4624 days ago Comments (3)Traits of biological programmers
Which Perl distribution should I choose for bioinformatics study : ActivePerl, Strawberry Perl, DWIM Perl, Citrus Perl ?
Manshi Raghubanshi 4590 days agoBioinformatics Scripts
By Jit 4063 days agomilkweedgenome.org - Some of the useful bioinformatics scripts. For example ... contig-stats.pl is a Perl script that will automatically describe features of a sequence assembly. http://milkweedgenome.org/?q=scripts
Reverse Complement Problem Solved with Perl
Last updated 3925 days ago by JitQuestion at http://rosalind.info/problems/1b/ #Find the reverse complement of a DNA string.#Given: A DNA string Pattern.#Return: Pattern, the reverse complement of Pattern.use strict;use warnings;my $string="AAAACCCGGT";my $finalString="";my %hash...-
Clump Finding Problem Solved with Perl
Last updated 3007 days ago by JitThe question at http://rosalind.info/problems/1d/ Script are moved to http://bioinformaticsonline.com/snippets/view/34633/clump-finding-problem-solved-with-perl CSBB-v1.0
By Neel 3540 days agogithub.com - CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R and python in background for specific modules....
