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AccNET
By Jitendra Narayan 2970 days agosourceforge.net - AccNET is a Perl application that presents a new way to study the accessory genome of a given set of organisms. Using the proteomes of these organisms, AccNET create a bipartite network compatible with common network analysis platforms. AccNET...SATSUMA : Highly sensitive whole-genome synteny alignments.
By Jit 3117 days agosatsuma.sourceforge.net - Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the conserved order and orientation of features, such as protein coding genes,...Hagfish - assess an assembly through creative use of coverage plots
By Abhi 3109 days agogithub.com - Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds on the concept of coverage plots and aims to assist (amongst others) in quality control of de novo genome assembly or...Stampy
By Abhi 3109 days agowww.well.ox.ac.uk - Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference genome. It's recommended for most workflows, including those for genomic resequencing, RNA-Seq and Chip-seq. Stampy excels in the mapping of...BioGPS
By Anjana 3107 days agobiogps.org - A free extensible and customizable gene annotation portal, a complete resource for learning about gene and protein function. http://biogps.org/#goto=welcomeClueGO
By Jit 3097 days agowww.ici.upmc.fr - ClueGO is a Cytoscape plug-in that visualizes the non-redundant biological terms for large clusters of genes in a functionally grouped network and it can be used in combination with GOlorize.Guest Faculty Centre for Bioinformatics at Pondicherry University
Guest Faculty Centre For Bioinformatics Jobs opportunity in Pondicherry University Qualification : M.Phil. (with NET/SLET)/ M.Tech. / M.E. in Computer Science with a minimum of 55% of marks as per UGC norms. Desirable : Ph.D and Teaching...DarkHorse
By Jit 3077 days agodarkhorse.ucsd.edu - DarkHorse is a bioinformatic method for rapid, automated identification and ranking of phylogenetically atypical proteins on a genome-wide basis. It works by selecting potential ortholog matches from a reference database of amino acid...NearHGT
By Jit 3077 days agojournals.plos.org - Horizontal gene transfer (HGT), the transfer of genetic material between organisms, is crucial for genetic innovation and the evolution of genome architecture. Existing HGT detection algorithms rely on a strong phylogenetic signal distinguishing the...Genome Workbench 2.10.7
By Gudiya Pal 3068 days agoGenome Workbench 2.10.7 is here! New features include added support for local custom BLAST databases and improvements to Tree View.
