Jit
Enthusiast computational biologist with business dream !!!
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PG2: Making Pangenome Graphs Easier to Understand
By Jitendra Narayan 49 days agoGenomics is moving beyond the traditional approach of studying DNA using a single reference genome. Today, researchers are increasingly using pangenomes, which represent genetic information from multiple genomes and capture a much broader range of...NovoGraph: building whole genome graphs from long-read-based de novo assemblies
By Jit 2882 days agogithub.com - NovoGraph: building whole genome graphs from long-read-based de novo assemblies An algorithmically novel approach to construct a genome graph representation of long-read-based de novo sequence assemblies. We then provide a proof of...Lifemap
By Jit 3466 days agolifemap-ncbi.univ-lyon1.fr - Lifemap is an interactive tool to explore the WHOLE NCBI TAXONOMY. The concept used in Lifemap is similar to the one used in cartography with tools like Google Maps© or Open Street Maps: exploring is done by zooming and panning. The...Dot, an interactive viewer for genome-genome comparison
By Jit 3187 days agogithub.com - Dot, an interactive dot plot viewer that allows genome scientists to visualize genome-genome alignments in order to evaluate new assemblies and perform exploratory comparative genomics. Dot supports the output of MUMmer’s nucmer aligner...shinyChromosome:a GUI for the interactive creation of non-circular whole genome diagrams
By Jit 2411 days agoyimingyu.shinyapps.io - shinyChromosome is a graphical user interface for interactive creation of non-circular whole genome diagrams developed using the R Shiny package. To create single-genome plot by aligning genome data along all chromosomes of a single genome, go to...NCBI PSI-BLAST Tutorial
By Jitendra Narayan 4792 days agohttp:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are...Sequencing By Xpansion
By Jitendra Narayan 4129 days agoXpandomer in a single drop reaction to sequence an entire human genome 1000X over.methylKit
By Jit 3777 days agogithub.com - methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods such as Agilent...Kaiju
By Jit 3753 days agohttp://kaiju.binf.ku.dk/ - Kaiju is a program for the taxonomic classification of metagenomic high-throughput sequencing reads. Each read is directly assigned to a taxon within the NCBI taxonomy by comparing it to a reference database containing microbial and viral protein...Software and Tools to detect structure variation with long reads !!
By Archana Malhotra 3492 days agoStructural variation caller tools using long reads
