Rahul Agarwal
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Parliament2: Runs a combination of tools to generate structural variant calls on whole-genome...
By Jit 1639 days agogithub.com - Parliament2 identifies structural variants in a given sample relative to a reference genome. These structural variants cover large deletion events that are called as Deletions of a region, Insertions of a sequence into a region, Duplications of a...Smudgeplot: Inference of ploidy and heterozygosity structure using whole genome sequencing data
By Neel 1001 days agogithub.com - This tool extracts heterozygous kmer pairs from kmer count databases and performs gymnastics with them. We are able to disentangle genome structure by comparing the sum of kmer pair coverages (CovA + CovB) to their relative coverage (CovB / (CovA +...Useful links to therapy, disease, drug and drug-target network data:
By Jit 1635 days agoUseful resources to therapy, disease, drug and drug-target network dataEbola virus disease (EVD)or Ebola haemorrhagic fever !!!
By Rahul Nayak 3757 days agoEbola virus disease (EVD)or Ebola haemorrhagic fever is a severe and often deadly illness in humans, caused by the Ebola virus. The disease has high mortality rate, killing upto 90% of people who are infected.
Tools for bacterial whole genome annotation
Last updated 2533 days ago by Radha AgarkarRAST – Web tool (upload contigs), uses the subsystems in the SEED database and provides detailed annotation and pathway analysis. Takes several hours per genome but I think this is the best way to get a high quality annotation...alien_index : identify potential contaminants or horizontally transferred genes in transcriptomes.
By Jit 1755 days agogithub.com - identify potential contaminants or horizontally transferred genes in transcriptomes. algorithm is based on alogorithm described in the following: Gladyshev, Eugene A., Matthew Meselson, and Irina R. Arkhipova. "Massive horizontal gene transfer in...DEG 5.0: a database of essential genes in both prokaryotes and eukaryotes
By Rahul Nayak 1333 days agowww.essentialgene.org - Essential genes are those indispensable for the survival of an organism, and their functions are therefore considered a foundation of life. Determination of a minimal gene set needed to sustain a life form, a fundamental question in biology, plays a...Orthoflow: workflow for phylogenetic inference of genome-scale datasets of protein-coding genes
By LEGE 275 days agogithub.com - Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes. Our goal was to make it straightforward to work from a combination of input sources including annotated contigs in Genbank format and FASTA files...33rd Annual Convention of Indian Association for Cancer Research from 13th to 15th February 2014
RGCB is organizing the 33rd Annual Convention of Indian Association for Cancer Research from 13th to 15th February 2014 with the theme "Discovery, Innovation and Translation in Cancer Research" Kindly log on to conference website...BioGPS
By Anjana 3106 days agobiogps.org - A free extensible and customizable gene annotation portal, a complete resource for learning about gene and protein function. http://biogps.org/#goto=welcome
