Rahul Nayak
A Bioinformatician
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NearHGT
By Jit 3758 days agojournals.plos.org - Horizontal gene transfer (HGT), the transfer of genetic material between organisms, is crucial for genetic innovation and the evolution of genome architecture. Existing HGT detection algorithms rely on a strong phylogenetic signal distinguishing the...PASA: Gene Structure Annotation and Analysis
By biogeek 3205 days agopasapipeline.github.io - PASA, acronym for Program to Assemble Spliced Alignments, is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation...WEGO : simple but useful tool for visualizing, comparing and plotting GO (Gene Ontology) annotation...
By BioStar 2368 days agowego.genomics.org.cn - WEGO (Web Gene Ontology Annotation Plot) is a simple but useful tool for visualizing, comparing and plotting GO (Gene Ontology) annotation results. As the GO vocabulary became more and more popular, WEGO was widely adopted and used in many...DarkHorse: a method for genome-wide prediction of horizontal gene transfer
By Jit 3393 days agowww.ncbi.nlm.nih.gov - A new approach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins is presented. The method is quantitative, reproducible, and computationally undemanding. It can be combined with genomic signature and/or...KOBAS: a web server for gene/protein functional annotation and functional gene set enrichment
By Jit 2909 days agokobas.cbi.pku.edu.cn - KOBAS 3.0 is a web server for gene/protein functional annotation (Annotate module) and functional gene set enrichment(Enrichment module). For Annotate module, it accepts gene list as input, including IDs or sequences, and generates annotations...Pacman
By Rahul Nayak 4250 days agoThe pacman package is an R package management tool that combines the functionality of base library related functions into intuitively named functions.clusterProfiler
By Jit 3764 days agowww.bioconductor.org - statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor version: Release (3.3)This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.Author:...SVbyEye: R Package to visualize alignments between two or multiple DNA sequences
By LEGE 749 days agogithub.com - R Package to visualize alignments between two or multiple DNA sequences includinga number of functionalities to facilitate processing of alignments in PAF format. SVbyEye, an open-source R package to visualize and annotate sequence-to-sequence...chromoMap-An R package for Interactive visualization and mapping of human chromosomes
By Rahul Nayak 3025 days ago Comments (1)An R package for Interactive visualization and mapping of human chromosomesplumber:An R package that converts your existing R code to a web API
By BioJoker 2764 days agohttps://www.rplumber.io/ - plumber allows you to create a REST API by merely decorating your existing R source code with special comments. Take a look at an example. # plumber.R #* Echo back the input #* @param msg The message to echo #* @get /echo function(msg=""){...
