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Sequence - Evolution - Function; Computational Approaches in Comparative Genomics
By Jit 2695 days agowww.ncbi.nlm.nih.gov - Sequence - Evolution - Function is an introduction to the computational approaches that play a critical role in the emerging new branch of biology known as functional genomics. The book provides the reader with an understanding of the...Sequence Tube Maps: displays multiple genomic sequences in the form of a tube map
By Jit 1748 days agogithub.com - A JavaScript module for the visualization of genomic sequence graphs. It automatically generates a "tube map"-like visualization of sequence graphs which have been created with vg. (https://github.com/vgteam/vg) Link to working demo:...SeqFu: A Suite of Utilities for the Robust and Reproducible Manipulation of Sequence Files
By Rahul Nayak 1028 days agotelatin.github.io - A general-purpose program to manipulate and parse information from FASTA/FASTQ files, supporting gzipped input files. Includes functions to interleave and de-interleave FASTQ files, to rename sequences and...SeqCAT: Sequence Conversion and Analysis Toolbox
By Neel 191 days agomtb.bioinf.med.uni-goettingen.de - Your all-in-one solution for smooth conversion of sequence coordinates. Designed for bioinformatics data analysis and daily laboratory work, SeqCAT simplifies sequence coordinate conversion. Extract gene and transcript information, manipulate...CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
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By Jit 2580 days agogithub.com - Scripts for the analysis of HGT in genome sequence dataMany-to-many pairwise alignments of two sequence sets
By Poonam Mahapatra 2378 days agoemboss.sourceforge.net - needleall reads a set of input sequences and compares them all to one or more sequences, writing their optimal global sequence alignments to file. It uses the Needleman-Wunsch alignment algorithm to find the optimum alignment (including gaps) of two...Kalign: fast multiple sequence alignment program for biological sequences.
By BioStar 1879 days agogithub.com - Kalign is a fast multiple sequence alignment program for biological sequences. Align sequences and output the alignment in MSF format: kalign -i BB11001.tfa -f msf -o out.msf Align sequences and output the alignment in clustal format: kalign...Complete genome sequence of Wuhan seafood market pneumonia virus is out !
By Jit 1788 days ago Comments (1)On Jan 10 2020, while news of the first fatality was barely trickling in, the 29,903 letters constituting the viral genome from an affected individual in Wuhan had already been elucidated (even though a few corrections were made subsequently).China’s BGI says it can sequence a genome for just $100
By Neel 1759 days ago Comments (6)China’s BGI says it can sequence a genome for just $100
