Rahul Nayak
A Bioinformatician
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tinycov: standalone command line utility written in python to plot coverage from a BAM file
By Jit 2387 days agogithub.com - Tinycov is a small standalone command line utility written in python to plot the coverage of a BAM file quickly. This software was inspired by Matt Edwards' genome coverage plotter. To install the stable version: pip3 install --user...ENCODE3: A collection of research articles and related content describing the Encyclopedia of DNA...
By Shruti Paniwala 2249 days agoENCODE 3 A collection of research articles and related content describing the Encyclopedia of DNA Elements, its datasets and tools.HELIANO: A fast and accurate tool for detection of Helitron-like elements
By LEGE 783 days agogithub.com - Helitron-like elements (HLE1 and HLE2) are DNA transposons. They have been found in diverse species and seem to play significant roles in the evolution of host genomes. Although known for over twenty years, Helitron sequences are still challenging...
Best book Titles for Learning Bionformatics
Last updated 4800 days ago by Jitendra Narayan Comments (4)Nothing can add to our intellect more than reading a book. In books, we can experience new things that we would not normally be able to experience. It is proved that books can change our lives and other people’s lives. Reading can make...Detail annotation of genes !
By Jit 2824 days agoftp.ncbi.nih.gov - gene_info recalculated daily--------------------------------------------------------------------------- tab-delimited one line per GeneID Column header line is the first line in the file. Note: subsets of gene_info are available in the...DEG 5.0: a database of essential genes in both prokaryotes and eukaryotes
By Rahul Nayak 2015 days agowww.essentialgene.org - Essential genes are those indispensable for the survival of an organism, and their functions are therefore considered a foundation of life. Determination of a minimal gene set needed to sustain a life form, a fundamental question in biology, plays a...Orthoflow: workflow for phylogenetic inference of genome-scale datasets of protein-coding genes
By LEGE 957 days agogithub.com - Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes. Our goal was to make it straightforward to work from a combination of input sources including annotated contigs in Genbank format and FASTA files...BioGPS
By Anjana 3787 days agobiogps.org - A free extensible and customizable gene annotation portal, a complete resource for learning about gene and protein function. http://biogps.org/#goto=welcomeUnderstanding liftOver !
By Rahul Nayak 3043 days agoLiftOver is a necesary step to bring all genetical analysis to the same reference build.NgAgo challenge CRISPR !!
By Abhimanyu Singh 3793 days agoA new genetic modification technology called NgAgo has some researchers really excited. How does it compare to CRISPR?
