Abhimanyu Singh
A bioinformatics beginner
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Krona
By Jit 3483 days agogithub.com - Krona allows hierarchical data to be explored with zooming, multi-layered pie charts. Krona charts can be created using an Excel template or KronaTools, which includes support for several bioinformatics tools and raw data formats. The interactive...BBTools for bioinformatician !
By Surabhi Chaudhary 3153 days ago Comments (1)BBTools can do almost everything now !Common steps for reads mapping !
By BioStar 1305 days agoMapping reads to a reference genome is an essential step in many types of genomic analysis, such as variant calling and gene expression analysis.HipSTR: Haplotype inference and phasing for Short Tandem Repeats
By BioJoker 2768 days agogithub.com - HipSTR was specifically developed to deal with these errors in the hopes of obtaining more robust STR genotypes. In particular, it accomplishes this by: Learning locus-specific PCR stutter models using an EM algorithm Mining candidate...Five points for bioinformatics software/tools
By Jitendra Narayan 4808 days ago Comments (1)Some five points to keep in mind for bioinformatics software/tools
Linux for bioinformatician !!!
Last updated 4587 days ago by Jitendra NarayanLinux, free operating system for computers, provides several powerful admin tools and utilities which will help you to manage your systems effectively and handle huge amount of genomic/biological data with an ease. The field of bioinformatics relies...-
List of Bioinformatics Software Tools for Next Generation Sequencing
Last updated 3791 days ago by JitCommercial tools Strand NGS offers many different tools including alignment, RNA-Seq, DNA-Seq, ChIP-Seq, Small RNA-Seq, Genome Browser, visualizations, Biological Interpretation, etc. Supports workflows “one can import the sample data in... -
Tools for Searching Repeats And Palindromic Sequences
Last updated 3093 days ago by Poonam Mahapatra Comments (2)What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociation Kinetics Experiments, and C-Value Paradox ). These sequences were later... CSBB-v1.0
By Neel 3749 days agogithub.com - CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R and python in background for specific modules....MafTools
By Jit 3517 days agogithub.com - maftools - An R package to summarize, analyze and visualize MAF files. Introduction. With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widley accepted and used to store variants detected. The Cancer Genome Atlas Project...
