Neel
Bioinformatics Beginner
Our Sponsors
Related items
PASA: Gene Structure Annotation and Analysis
By biogeek 2501 days agopasapipeline.github.io - PASA, acronym for Program to Assemble Spliced Alignments, is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation...bpRNA: large-scale automated annotation and analysis of RNA secondary structure
By Rahul Nayak 2354 days agogithub.com - bpRNA, a novel annotation tool capable of parsing RNA structures, including complex pseudoknot-containing RNAs, to yield an objective, precise, compact, unambiguous, easily-interpretable description of all loops, stems, and pseudoknots, along with...Caretta – A multiple protein structure alignment and feature extraction suite
By Rahul Nayak 1414 days agowww.bioinformatics.nl - Caretta – a multiple protein structure alignment and feature extraction suite Caretta, a multiple structure alignment suite meant for homologous but sequentially divergent protein families which consistently returns accurate alignments...Epiviz: an interactive visualization tool for functional genomics data.
By Jit 2307 days agohttps://epiviz.github.io/ - Epiviz is an interactive visualization tool for functional genomics data. It supports genome navigation like other genome browsers, but allows multiple visualizations of data within genomic regions using scatterplots, heatmaps and other...Trelliscope: flexibly visualize large, complex data in great detail from within the R statistical...
By Jit 1746 days agodeltarho.org - Trelliscope provides a way to flexibly visualize large, complex data in great detail from within the R statistical programming environment. Trelliscope is a component in the DeltaRho environment. For those familiar with Trellis...LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
By BioStar 1718 days agocsb5.github.io - LoFreq* (i.e. LoFreq version 2) is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-call qualities and other sources of errors inherent in sequencing (e.g. mapping or...Submit your SARS-CoV-2 sequence data to GenBank
By Neel 1666 days agoSubmit your SARS-CoV-2 sequence data to GenBank and SRA with our new submission landing page.GraphUnzip: Phases an assembly graph using Hi-C data and/or long reads.
By Jit 1364 days agogithub.com - GraphUnzip, a fast, memory-efficient and accurate tool to unzip assembly graphs into their constituent haplotypes using long reads and/or Hi-C data. As GraphUnzip only connects sequences in the assembly graph that already had a potential link based...Corona Virus Genome and Data Download !
By Abhi 1054 days agowww.ncbi.nlm.nih.gov - Genes and its related metadata could be found on https://www.ncbi.nlm.nih.gov/datasets/coronavirus/genomes/gget
By BioStar 580 days agogithub.com - gget is a free, open-source command-line tool and Python package that enables efficient querying of genomic databases. gget consists of a collection of separate but interoperable modules, each designed to facilitate one type of...
