Rahul Nayak
A Bioinformatician
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Meraculous: De Novo Genome Assembly with Short Paired-End Reads
By Jit 3245 days agowww.ncbi.nlm.nih.gov - We describe a new algorithm, meraculous, for whole genome assembly of deep paired-end short reads, and apply it to the assembly of a dataset of paired 75-bp Illumina reads derived from the 15.4 megabase genome of the haploid yeast Pichia...HECIL: A Hybrid Error Correction Algorithm for Long Reads with Iterative Learning
By Abhimanyu Singh 2824 days agogithub.com - HECIL—Hybrid Error Correction with Iterative Learning—a hybrid error correction framework that determines a correction policy for erroneous long reads, based on optimal combinations of decision weights obtained from short read...Protocol for De novo Genome Assembly using Illumina Reads
By BioStar 2078 days agoIn this protocol, we address and describe the de novo assembly method for small to medium-sized genomes.transrate: Understanding your transcriptome assembly
By Neel 2997 days agohibberdlab.com - Transrate is software for de-novo transcriptome assembly quality analysis. It examines your assembly in detail and compares it to experimental evidence such as the sequencing reads, reporting quality scores for contigs and assemblies. This...NGS course Medical Genomics, scheduled for 17-20 September 2013 in UZ Leuven (Belgium).
By Poonam Mahapatra 4792 days agoThe 4-day course is organized as a series of morning lectures and afternoon hands-on workshops.
Useful Publications and Websites for Deep Sequencing Data Analysis
Last updated 4653 days ago by Rahul NayakGlobal overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text [equally relevant to animal and microbial systems] Sense from sequence reads: methods for...GABi
GABi Research The major researching fields defined as the GABi scope are described next: Sequence Analysis Protein Structure Prediction Comparative Genomics Functional Analysis of Residues on Protein Families Gene/Protein...Managing and Analyzing Next-Generation Sequence Data
By Rahul Agarwal 4522 days agowww.ploscompbiol.org - Centralized Bioinformatics Core Facilities provide shared resources for the computational and IT requirements of the investigators in their department or institution. As such, they must be able to effectively react to new types of experimental...Genomics and Personalized Medicine Breakthroughs
By Rahul Nayak 4499 days agohttp://bit.ly/e8QGzY Human genome mapping is now enabling a breakthrough in medical innovation -- personalized medicine. What does this mean for patients? We can now identify predispositions to disease, predict how we metabolize drugs, and figure...Genomic Medicine - Bruce Korf (2014)
By Neel 4477 days agoMay 21, 2014 - Current Topics in Genome Analysis 2014 A lecture series covering contemporary areas in genomics and bioinformatics. More: http://www.genome.gov/COURSE2014
