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gSearch: a fast and flexible general search tool for whole-genome sequencing
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By Aaryan Lokwani 2965 days agogithub.com - LRCstats is an open-source pipeline for benchmarking DNA long read correction algorithms for long reads outputted by third generation sequencing technology such as machines produced by Pacific Biosciences. The reads produced by third generation...Heatmapper: web-enabled heat mapping for all
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By Abhimanyu Singh 2698 days agolin-group.cn - iRNAD, for identifying D modification sites in RNA sequence. In this predictor, the RNA samples derived from five species were encoded by nucleotide chemical property and nucleotide density. Support vector machine was utilized to perform the...Chromonomer: a tool set for repairing and enhancing assembled genomes through integration of...
By Jit 2421 days agocatchenlab.life.illinois.edu - Chromonomer is a program designed to integrate a genome assembly with a genetic map. Chromonomer tries very hard to identify and remove markers that are out of order in the genetic map, when considered against their local assembly order; and to...mixtureS: a novel tool for bacterial strain reconstruction from reads
By BioStar 2235 days agowww.cs.ucf.edu - mixtureS that can de novo identify bacterial strains from shotgun reads of a clonal or metagenomic sample, without prior knowledge about the strains and their variations. Tested on 243 simulated datasets and 195 experimental datasets, mixtureS...vsFilt: A tool to improve virtual screening by structural filtration of docking poses
By Neel 2139 days agobiokinet.belozersky.msu.ru - The vsFilt is the first open application for post-docking structural filtration, available as a web-server. The new tool is easy to use and configure to detect a wide range of interaction types that are known to be involved in molecular recognition,...InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams
By Jit 1558 days agowww.interactivenn.net - InteractiVenn, a more flexible tool for interacting with Venn diagrams including up to six sets. It offers a clean interface for Venn diagram construction and enables analysis of set unions while preserving the shape of the diagram. Set unions are...HELIANO: A fast and accurate tool for detection of Helitron-like elements
By LEGE 782 days agogithub.com - Helitron-like elements (HLE1 and HLE2) are DNA transposons. They have been found in diverse species and seem to play significant roles in the evolution of host genomes. Although known for over twenty years, Helitron sequences are still challenging...
