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EMBL Postdoc position in Bacterial Gene Gain Loss
A post-doctoral fellowship is available in the research groups of Nick Goldman (EBI) and John Welch (Genetics Department, Cambridge University) under the EMBL-EBI / Cambridge Computational Biomedical Postdoctoral Fellowship scheme. The project is...
Unicycler: Hybrid assembly pipeline for bacterial genomes
By Jit 2619 days agogithub.com - Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs...Mike Ritchie Lab
Mike Ritchie Lab primary research focus is the detection of susceptibility genes for common diseases such as cancer, diabetes, hypertension, and cardiovascular disease, among others. The approaches will involve the development and application of new...HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
By Jit 2593 days agonservant.github.io - HiC-Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to the normalized contact maps. Since version 2.7.0, HiC-Pro supports the main Hi-C protocols, including digestion protocols as well as protocols that do not...Research Associate @ ICGEB, New Delhi.
Applications are invited for Research Associate position in the DBT Sponsored Bioinformatics Infrastructure Facility at ICGEB, New Delhi. Essential requirements: Experience of using bioinformatics tools. Experience of working in Linux. Basic...MCAT: Motif Combining and Association Tool
By Neel 2190 days agogithub.com - This is a pipeline for finding motifs in fasta files.It can be run from the command line as follows: usage: orange_pipeline_refine.py [-h] [-w W] [--nmotifs NMOTIFS] [--iter ITER] [-c C][-s S] [-d] [-ff] [-v V]positive_seq negative_seq positional...SRF/JRF/RA @ UNIVERSITY OF HYDERABAD
SCHOOL OF CHEMISTRY, UNIVERSITY OF HYDERABAD Applications on plain paper along with details of CV (relevant photocopies of their qualifications/experience and reprints of published work to be attached) are invited from qualified candidates for...TRITEX sequence assembly pipeline for Triticeae genomes
By Jit 1971 days agotritexassembly.bitbucket.io - The pipeline is open-source and hosted in a public Bitbucket repository. TRITEX has been run on highly inbred genotypes of barley (Hordeum vulgare), tetraploid wheat (Triticum turgidum) and hexaploid wheat (T. aestivum) with reasonable...Research Fellow in Bioinformatics @ Queen's University Belfast -Institute for Global Food...
Ref: 13/102900 Available immediately until 30th November 2015, to work on the development of bioinformatics approaches to aid analysis of data derived from the metabolomic profiling of biological matrices. The successful applicant will lead...SLR-superscaffolder: A scaffold assemble pipeline for stLFR reads.
By Jit 1793 days agogithub.com - This is a scaffold assembler designed for stLFR reads[1]. It uses the link-reads information from stLFR reads to assemble contigs to scaffolds. Here is an illustration of this pipeline:
