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Tetra-Nucleotide Analysis
By Jit 2786 days agochunlab.wordpress.com - A tetra-nucleotide is a fragment of DNA sequence with 4 bases (e.g. AGTC or TTGG). Pride et al. (2003) showed that the frequency of tetra-nucleotides in bacterial genomes contain useful, albeit weak, phylogenetic signals. Even though...NCBI Prokaryotic Genome Annotation Pipeline
By Jit 2774 days agowww.ncbi.nlm.nih.gov - NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal genomes (chromosomes and plasmids). Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional...ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
By Jit 2495 days agohttp://etetoolkit.org - ETE v3, featuring numerous improvements in the underlying library of methods, and providing a novel set of standalone tools to perform common tasks in comparative genomics and phylogenetics. The new features include (i) building gene-based and...LRSDAY: Long-read Sequencing Data Analysis for Yeasts
By Poonam Mahapatra 1942 days agogithub.com - Long-read sequencing technologies have become increasingly popular in genome projects due to their strengths in resolving complex genomic regions. As a leading model organism with small genome size and great biotechnological importance, the budding...BioJupies: Automatically Generates RNA-seq Data Analysis Notebooks
By Rahul Nayak 1460 days agoamp.pharm.mssm.edu - With BioJupies you can produce in seconds a customized, reusable, and interactive report from your own raw or processed RNA-seq data through a simple user interface BioJupies now supports user accounts! Sign in from the top right corner of the page...DeepVariant : an analysis pipeline that uses a deep neural network to call genetic variants from...
By Jit 1790 days agogithub.com - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation...Juicebox: Visualization and analysis software for Hi-C data
By Jit 1763 days agogithub.com - Juicebox is visualization software for Hi-C data. This distribution includes the source code for Juicebox, Juicer Tools, and Assembly Tools. Download Juicebox here, or use Juicebox on the web. Detailed documentation is...pipesnake: bioinformatics best-practice analysis pipeline for phylogenomic reconstruction
By LEGE 302 days agogithub.com - ausarg/pipesnake is a bioinformatics best-practice analysis pipeline for phylogenomic reconstruction starting from short-read 'second-generation' sequencing data. The pipeline is built using Nextflow, a workflow tool to run tasks across...Amity University Bioinformatics Summer Program - Kolkata
By eliabrodsky 2017 days agoRegistrations are now open for the 2019 Summer Bioinformatics Training program at Amity University, Kolkata.Bpipe - a tool for running and managing bioinformatics pipelines
By Radha Agarkar 3133 days agohttp://docs.bpipe.org/ - Bpipe provides a platform for running big bioinformatics jobs that consist of a series of processing stages - known as 'pipelines'. January 20th, 2016 - New! Bpipe 0.9.9 released! Download latest, all Documentation Mailing List (Google...
