Jitendra Narayan
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pyScaf
By Bulbul 3368 days agogithub.com - pyScaf orders contigs from genome assemblies utilising several types of information: paired-end (PE) and/or mate-pair libraries (NGS-based mode) long reads (NGS-based mode) synteny to the genome of some related species (reference-based...Pacbio Long Reads Compatible Software and Tools
By Archana Malhotra 3282 days agogithub.com - The following software packages are known to be compatible with PacBio® data, in addition to PacBio's own SMRT® Analysis suite. All packages are believed to be open source or freely available for non-commercial use. See the individual...EyeChrom: Visualizing Chromosome Count Data From Plants
By Jit 2618 days agoeyechrom.com - It's goal is to show chromosmal data per genus. Select the genus, and the plot will show the records found for it in the Chromosome Counts Database. note: Report an issue via Gihub: github.com/roszenil/CCDBcurator and...sockeye
By Jit 3308 days agowww.bcgsc.ca - This sockeye software uses the Ensembl database project to import sequence and annotation information from several eukaryotic species. A user can additionally import their own custom sequence and annotation data. Individual annotation objects...InfoGenomeR: Integrative reconstruction of cancer genome karyotypes
By Jit 1771 days agogithub.com - InfoGenomeR is the Integrative Framework for Genome Reconstruction that uses a breakpoint graph to model the connectivity among genomic segments at the genome-wide scale. InfoGenomeR integrates cancer purity and ploidy, total CNAs, allele-specific...
Is reference genome necessary for gene expression study in transcriptome sequencing or for variant discovery in genome sequencing?
Rahul Agarwal 4619 days agoCancer's origins revealed
By Jitendra Narayan 4590 days agoResearchers discover the genetic imprints and signatures left by DNA-damaging processes that lead to cancer.An entire genome written in lab
By Rahul Nayak 4519 days agoResearchers rewrite an entire genome — and add a healthy twistDNA Replication Process [3D Animation]
By Rahul Nayak 4322 days agoSee an organised list of all the animations: http://doctorprodigious.wordpress.com/hd-animations/
