Surabhi Chaudhary
A Bioinformatician
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Rosenberg lab
Research. Research in the lab focuses on mathematical, statistical, and computational problems in evolutionary biology and human genetics. Long-term interests of the lab include topics such as: Human genetic variation Inference of human...Genomic architecture surrounding the fusion site of human chromosome 2
By LEGE 581 days agoThis fusion event is a key evolutionary marker distinguishing humans from other great apes, as humans have 46 chromosomes while chimpanzees, gorillas, and orangutans possess 48. The fusion occurred through an end-to-end joining of two ancestral...When Thousands of Bacterial Genomes Become One Giant Map
By LEGE 40 days agoDeveloped by Jérôme Arnoux and colleagues, PANORAMA is a computational tool designed to explore bacterial pangenomes—the complete collection of genetic possibilities found across a species or group of related organisms. Instead of looking at every...The Tree That Learned to Read Genomes
By BioStar 26 days agoA recent study by Webster and Chapman introduces Buscogeny, an open-source bioinformatics pipeline designed to make this process easier. The tool uses BUSCO (Benchmarking Universal Single-Copy Orthologs), which identifies conserved genes that are...Detail annotation of genes !
By Jit 2826 days agoftp.ncbi.nih.gov - gene_info recalculated daily--------------------------------------------------------------------------- tab-delimited one line per GeneID Column header line is the first line in the file. Note: subsets of gene_info are available in the...Conserved Domain Database (CDD) version 3.11 released
By Shikha Logwani 4612 days agoNew CDD Release v.3.11 includes recomputed PSSMs and many more ...NCBI Magic-BLAST
By Jit 2975 days agoncbi.github.io - Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome. Each alignment optimizes a composite score, taking into account simultaneously the two reads of a pair, and in case of...Magic-BLAST
By Shruti Paniwala 2391 days agoncbi.github.io - Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome. Each alignment optimizes a composite score, taking into account simultaneously the two reads of a pair, and in case of...New Release of RefSeq !
By Abhi 812 days agohttps://ncbiinsights.ncbi.nlm.nih.gov/2024/07/15/refseq-release-225/ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
By Jit 3152 days agohttp://etetoolkit.org - ETE v3, featuring numerous improvements in the underlying library of methods, and providing a novel set of standalone tools to perform common tasks in comparative genomics and phylogenetics. The new features include (i) building gene-based and...
