Jitendra Narayan
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ChromHMM: Chromatin state discovery and characterization
By Abhimanyu Singh 3244 days agocompbio.mit.edu - ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial...Jayaram Lab
Responsible (a) for developing Chemgenome, Bhageerath & Sanjeevini methods & softwares for genome annotation, protein tertiary structure prediction & computer aided drug design respectively, (b) for setting up a multi-teraflop...DIAMOND
By Jit 3236 days agogithub.com - DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitable for protein-protein search as well as DNA-protein search on short reads and longer...
Bioinformatics Algorithms
Last updated 4617 days ago by Jitendra Narayan Comments (6)An algorithm is a computable set of steps to achieve a desired result. We use algorithms every day. For example, a recipe for baking a cake is an algorithm. Most programs, with the exception of some artificial intelligence applications, consist of...Tetra-Nucleotide Analysis
By Jit 3229 days agochunlab.wordpress.com - A tetra-nucleotide is a fragment of DNA sequence with 4 bases (e.g. AGTC or TTGG). Pride et al. (2003) showed that the frequency of tetra-nucleotides in bacterial genomes contain useful, albeit weak, phylogenetic signals. Even though...-
Genomics for Bioinformatician
Last updated 4613 days ago by Jitendra NarayanGenomics is the study of the genomes of organisms. The field includes intensive efforts to determine the entire DNA sequence of organisms and fine-scale genetic mapping efforts. The field also includes studies of intragenomic phenomena such as... Bioinformatician at 23andMe
23andMe’s mission is to help people access, understand, and benefit from the human genome. We are a group of passionate individuals excited to push the boundaries of what’s possible to help turn genetic insight into better health and personal...Research with help of bioinformatics helpful
By Jit 4600 days agoBioinformatics and endocrinology ...A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
By Abhimanyu Singh 3221 days agowww.sanger.ac.uk - PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of programs that we developed: ABACAS, that is able to contiguate contigs from a de novo assembly against a closely related reference. IMAGE, an...Five points for bioinformatics software/tools
By Jitendra Narayan 4597 days ago Comments (1)Some five points to keep in mind for bioinformatics software/tools
