Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...the kmer “noise” is part of the final assembly? What do you think contamination would look like in the kmer plot? What can the kmer graph tell you about the ploidy of...1391 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
Reapr is a tool trying to fin...low span coverage, or reads mapping too far or too close to e...hopefully correct) contigs. Reapr runs pretty slowly, sadly,...into any problems, run reapr facheck <assembly.fasta&g...e next tool we need is reapr smaltmap which creates...1391 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Biology Direct journals accept short notes/ application notes https://biologydirect.biomedcentral.com/submission-guidelines/aims-and-scope1396 days ago
1415 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
International Journal of Bioinformatics Research and Applications Indexed in Scopus (Elsevier) Academic OneFile (Gale) ACM Digital Library Current Awareness in Biological Sciences (Elsevier) Chemical Abstracts (CAS)1417 days ago
Comment on "FRODOCK 2.0: fast protein–protein docking server"
A web applet for browsing protein-protein interactions was implemented. It enables the display of interaction relationships, based upon neighboring distance and biological function. Availability: The Java applet is available at http://www.charite.de/bioinformatics1437 days ago
Comment on "Coronavirus Resources !"
Gene and protein expression data of human genes implicated in the virus infection of the host cells. Identifying cell types and genes with highest expression in SARS-CoV-2 infections. https://www.covid19dataportal.org/expression?db=expression1477 days ago
Comment on "Coronavirus Resources !"
Range of SARS-CoV-2 and SARS-CoV data for drug target identification and prioritisation. https://www.covid19dataportal.org/targets?db=complex-portal1477 days ago
Comment on "Coronavirus Resources !"
Curated range of SARS-CoV-2 compound activity data.https://www.covid19dataportal.org/compounds?db=chembl-document1477 days ago
Comment on "Coronavirus Resources !"
Curated functional and classification data on the SARS-CoV-2 protein entries and associated protein receptors. https://www.covid19dataportal.org/proteins?db=uniprot-covid191477 days ago