BBTools for bioinformatician !
...directly in BBMap, or with pileup, if you already have a sam file. For example: Code: $ pileup.sh in=mapped.sam covstats=coverage.txt Calculating coverage of the genome Pro...2299 days ago
2491 days ago
Seal: SEquence ALignment evaluation suite
...del rate. Applying alignment tools to the genome and the reads through a standardized interface. Parsing the output of the alignment tool and calculating the number of reads that were...2343 days ago
3950 days ago
List of In-silico Binding Site Prediction Tools
...surface and those in the core of the protein. In order to differentiate between such buried residues, we describe a computational procedure for calculating the depth of a residue from t...3773 days ago
Edit distance application in bioinformatics !
...o array of arrays my $css_str_ref = CSS_Sorted( $STR1, $STR2 ); # ref to array of strings There are many different modules on CPAN for calculating the edit distance between two...2370 days ago
2152 days ago