Comment on "Short-read assembly using Spades !"
...QUAST or BUSCO. These tools assess the completeness and accuracy of the assembled genome by comparing it to reference genomes or sets of conserved genes. Iterative assembly: If...458 days ago
Comment on "Tools for Differential expression analysis"
...nomics and transcriptomics research that allows researchers to identify genes that are differentially expre...a non-parametric method based on the relative expression values of the genes and provides a user-friendly...463 days ago
Comment on "Tools for RNA classification"
...onal RNA molecules. RNAmmer: RNAmmer is a tool for predicting rRNA genes in genomic sequences. It uses...sequences. tRNAscan-SE: tRNAscan-SE is a tool for identifying tRNA genes in genomic sequences. It uses...463 days ago
Comment on "Basic command-line to run BLAST"
...ical research because it is fast, efficient, and easy to use. It has helped researchers make many important discoveries, including identifying new genes and understanding the genetic...463 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...CBI or Ensembl. Gene annotation: Annotate the genes in each genome using gene pre...or tools such as MAKER. Identify orthologous genes: Identify the orthologous gen...ies and can be used to predict the function of genes in related species.466 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
...:: 4.714) Epigenetics (4.780 :: 5.081) Frontiers in Genetics G3-Genes Genomes Genetics (3.198 :: 3.508) Gene (2.138 :: 2.185) Genes (3.242) Genetics (...1147 days ago
Comment on "Coronavirus Resources !"
Gene and protein expression data of human genes implicated in the virus infection of the host cells. Identifying cell types and genes with highest expression in SARS-CoV-2 infections. https://www.covid19dataportal.org/expression?db=expression1466 days ago
Comment on "List of gene ontology software and tools"
GeneSCF serves as command line tool for clustering list of genes based on functional annotation (Geneontology, KEGG, REACTOME and NCG). This tool requires gene list in the form of Entrez Gene IDs or Official gene symbols as a input. http://genescf.kandurilab.org/1535 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
...:: 4.714) Epigenetics (4.780 :: 5.081) Frontiers in Genetics G3-Genes Genomes Genetics (3.198 :: 3.508) Gene (2.138 :: 2.185) Genes (3.242) Genetics (...1885 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
...GenomicsBMC CancerGenome BiologyGenome ResearchNucleic Acids ResearchScienceNew England Journal of Medicine (NEJM) The LancetelifeEBiomedicineGenes and developmentPNASBloodCellJ...2370 days ago