String graph based genome assembly software and tools !
In graph theory, a string graph is an intersect...approach for assembling large genomes from NGS data caught our atte....com/jts/sga Assembles large genomes from high coverage short read...E: String-overlap Assembly of GEnomes https://github.com/lucia...2377 days ago
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp. Reads longer th...] rendomreads.sh gains the ability to simulate metagenomes. coverage=X will automat...fold. So, if you concatenate together 20 bacterial genomes,...2319 days ago
List of motif discovery tools !
In genetics, a sequence motif is a nucleotide or amino-acid sequence pattern that i...EXPASY Proteome Tools Collection Use a collection of tools for protein analyses. EXPASY-Findmod Predict...2042 days ago
10 NGS services companies around the globe !
The global NGS services market is expected to reach USD 13.1 billion by 2025.&...ides next generation sequencing services including genomes, targeted (re)-sequencing, human sample sequencing, transcriptomes, metagenomes,...1308 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluation for improved consensus accuracy (Ara...sp;LeafGo – workflow to rapidly produce high-quality de novo plant genomes...1040 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembly method for small to medium-sized genomes. What is de novo genome assembly?The method of taking a larg.../inGAP is also useful for finding structural variants between genomes...1253 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Nastouli E, Keane J.... 15, R46 (2014). MUMmer: Versatile and open software for comparing large genomes....1096 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experimen...CoMeta: Classification of Metagenomes Using k-mers, PLOS ONE,&...ssion of large collections of genomes, Scientific Reports,&nbs...distances in a collection of genomes. • Deorowicz...912 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Functional An...struction Tool Based on Whole Genomes Construct phylogenetic tree...iometric comparisons of whole genomes Conduct comparative biometri...ompletely sequenced microbial genomes. MEGA -- Molecular Evolu...726 days ago
Bioinformatics tools to explore SSRs in genomes !
There are several bioinformatics tools that can be used to explore Simple Sequence Repeats (SSRs), which are also known as microsatellites. Here are a few examples:...473 days ago