Results for "GitHub"
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String graph based genome assembly software and tools !
...: 1.SGA (String Graph Assembler) https://github.com/jts/sga Assembles large...tring-overlap Assembly of GEnomes https://github.com/lucian-ilie/SAGE2 SAGE,...unning times. 4. BASE https://github.com/dhlbh/BASE It enhances t...2381 days ago
Installing Perl environment on Linux
...PANMinus. $ cd $ git clone git://github.com/tokuhirom/plenv.git ~/.plenv $ git clone git://github.com/tokuhirom/Perl-Build.git...can help you to download files from GitHub server. echo means "pri...ormation, please visit: https://github.com/tokuhirom/plenv2373 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
...ast nanopore data tuned alignment tool https://github.com/lh3/bwa GraphMapMapper for long and error-prone readshttps://github.com/isovic/graphmap LASTNano...tection tool for nanopore sequence datahttps://github.com/mitenjain/nanopore Nanoc...2372 days ago
Installing Bandage on Ubunty !
...structions successfully build Bandage (https://github.com/rrwick/Bandage ) on a fre...libqt5svg5-dev Download the Bandage code from GitHub: git clone https://githu...0) ...➜ Tools git:(master) ✗ git clone https://github.com/rrwick/Bandage.gitCloning...2241 days ago
Install ImageMagick from Unix Source
...e answer to these questions, and more, in Advanced Unix Source Installation. jitendra@jitendra-UNLOCK-INSTALL[Downloads] git clone https://github.com/ImageMagick/ImageMagick.g...2198 days ago
- Download this https://github.com/trinityrnaseq/trinityrnaseq/releases/tag/Trinity-v2.6.6 ➜ cd trini...Trinity execution # # For more details, visit: http://trinityrnaseq.github.io # ######################...
2185 days ago
Converting a VCF into a FASTA given some reference !
...s by David Eccles ./vcf2fq.pl -f <input.fasta> <all-site.vcf> > <output.fastq> https://github.com/gringer/bioinfscripts/blob/master/vcf2fq.pl https://github.com/lh3/samtools/blob/master/...2168 days ago
List of tools frequently used while genome assembly
...on (v. 1.18) Nanopolish (v. 0.8.3) I have used the following tools to assess genome assembly characteristics ANI.pl (https://github.com/chjp/ANI) CheckM (v...1982 days ago
Software for genome assembly !
...assembly: 1 Falcon https://github.com/PacificBiosciences/pb-ass...html 3 Miniasm assembler https://github.com/lh3/miniasm 4 PBJelly sc...5 ARCS scaffolding tool https://github.com/bcgsc/arcs 6 Redundans r...ph assembly viewer https://rrwick.github.io/Bandage/ 11 Gepard dotter...1396 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluation for improved consensus accuracy (Arang Rhie)● PanGenie – algorithm that l...1044 days ago
