Frequently used bioinformatics tools for viral genome analysis !
...en: Kraken: ultrafast metagenomic sequence classification using exact alignments. Wood, D. E. & Salzberg,...rriman, M. Nucleic Acids Res. 39, e57 (2011). SAMtools: The Sequence Alignment/Map format and SAMtools. Li,...1074 days ago
Illumina based assembly pipeline steps !
...al of host reads (Kraken 2; optional) Variant calling Read alignment (Bowtie 2) Sort and index alignments (SAMtools) Primer sequence...rt (QUAST) Present QC and visualisation for raw read, alignment, assembly and variant calling...904 days ago
Useful Bioinformatics Analysis Tools !
...Compressor of multiple sequence alignments of proteins. • &n...ion of protein multiple sequence alignment files, Bioinformatics,&n...h;862, FAMSA Multiple sequence alignment designed for huge families of..., QuickProbs Multiple sequence alignment designed especially for GPU....891 days ago
List of comparative genomics resources !
...om Comparisons of Multiple Vertebrate Genomes Access to whole genome alignments of human, mouse, rat and fis...otic transcription regulation. SALAD -- Surveyed contained motif ALignment diagram and the Associating D...705 days ago
Bioinformatics Tools for Phylogeny !
Direct access to the individual tools available on this server. Multiple Alignment:Phylogeny:Tree viewers:Utilities: MUSCLE PhyML TreeDyn Gblocks T-Coffee /&nb...209 days ago
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