Protocol for De novo Genome Assembly using Illumina Reads
...aseclear.com/landingpages/basetools-a-wide-range-of-bioinformatics-solutions/gapfiller/ IMAGE (V2) - http://sourceforge.net/apps/mediawiki/image2/index.php?title=Main_Page Genome v...1246 days ago
Illumina based assembly pipeline steps !
...cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignment (Bowtie 2) Sort and index alignments (SAMtools) Primer...919 days ago
Useful Bioinformatics Analysis Tools !
...estimation, Bioinformatics, 2019; 35(1):133–136, MuGI Index allowing queries for a collec...nces. • Danek, A., Deorowicz, S., Grabowski, Sz., Indexes of Large Genome Collections...905 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Functional Annotations of Proteins between Sequenced Genomes Compare structural and functional annotations of pr...719 days ago
Finding a mimicry game for teaching on-line and mentioned general resources
...hThreeStrategies/ NetLogo: http://ccl.northwestern.edu/netlogo/models/index.cgi Population Genetics: ht...://arludo.com/ a compilation of resources: https://planted.botany.org/index.php?P=Home Finally, Donald F...719 days ago
Useful link to teach evolution !
...hThreeStrategies/ NetLogo: http://ccl.northwestern.edu/netlogo/models/index.cgi Population Genetics: ht...://arludo.com/ a compilation of resources: https://planted.botany.org/index.php?P=Home Finally, Donald F...620 days ago
586 days ago
Tools for Differential expression analysis
...com/stephens999/ashr, https://cran.r-project.org/web/packages/ashr/index.html consensusDE - ...MetaCycle - https://cran.r-project.org/web/packages/MetaCycle/index.html, https://github.com...586 days ago
Common steps for reads mapping !
...r that is appropriate for your type of data and research question. Index the reference genome: Before mapping reads, the reference genome needs to be indexed. This involves creating an...465 days ago