CANU genome assembly parameters !
Choose the appropriate parameters to run Canu and run it. The assembly will take about an hour. Yo...asta.gz : file containing the input sequences after correction, trim and split based on...1972 days ago
1863 days ago
Understand Social Media Importance for Researchers With Benefits to the Strategy !
Why have so many researchers embraced Facebook or Instagram pages? They understand the importance...cademic circles. ImpactStory – not essential but fun. You can make a profile based on...1600 days ago
New Machine Learning Packages in R
Machine Learning autokeras v1.0.1: Implements an interface to AutoKeras, an ope...ts functions to predict simultaneous multiple outcomes based on revis...Implements methods for scaling models and classifiers based on...1527 days ago
10 NGS services companies around the globe !
The global NGS services market is expected to reach USD 13.1 billion by 2025. Here...iego, U.S. Illumina, Inc. is one of the leading players in DNA sequencing and array-based tec...1287 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluation for improved consensus accuracy (Arang Rhie)● PanGenie – algorithm that leve...1019 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity analysis, and the other is based on...1183 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Go...sembly algorithms. Salzberg, S. L. et al. Genome Res. 22, 557-67 (2012). KMC: Disk-based k-m...1074 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignment...904 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. &bu...p;Deorowicz, S., FQSqueezer: k-mer-based compression of sequencing dat...-Grabysz, A., Grabowski, Sz., Disk-based k-mer co...S., RECKONER: read error corrector based on...891 days ago