2161 days ago
CANU genome assembly parameters !
Choose the appropriate parameters to run Canu and run it. The assembly will take about an hour. You can use two core...read_file.fastq.gz A default Canu run produces usually high quali...1972 days ago
50 IISC Raman Post Doctoral Fellowships
IISC Bangalore has launched Raman Post-Doc Program. Apply For Raman Post Doctoral Fellowship at IISC Bangalore. Bios...ns for intensely motivated individuals with an established record of high quali...1626 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluat...-read transcripts that can assess the quality of data and the preprocessing...samples to cluster and generate high-quality consensus sequences from HiFi...ash; workflow to rapidly produce high-quali...1019 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...dard is like. If required, raw data cleanup/quality trimming. Choose an adequate...rmine the efficiency of the assembly. Read Quality Control:Check the qualiy with fastQC.Script...Any mis-assemblies can occur. Mis-assembly checking and assembly metric tools:...1232 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity analysis, and the other is based on the Ks dist...v20190103.cds.fasta.blast.tsv.mcl Sspon.v20190103.cds.fasta Step 3 : If the quali...1183 days ago
Illumina based assembly pipeline steps !
...nnotation (SnpEff, SnpSift) Consensus assessment report (QUAST) Lineage analysis (Pangolin) Clade assignment, mutation calling and sequence quality checks (Nextclade) Individual vari...904 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. • Kawulok, J., Deorowicz, S....udys, A., Deorowicz, S., QuickProbs 2: towards rapid construction of high-quali...891 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Functional Annotations of Proteins between Sequenced Genomes...n interactive online poster presentation on the Macaque genome, including high-quali...705 days ago
Common steps for reads mapping !
Mapping reads to a reference genome is an essential step in many typ...appers accept FASTQ or BAM files. Depending on the quality of the data, it may need to b...s should be evaluated. This includes assessing the quali...451 days ago