CANU genome assembly parameters !
Choose the appropriate parameters to run Canu and run it. The assembly will take about...rts generated by the assembler, or calculated using standard UNIX command line tools. More at https://canu.r...1973 days ago
List of tools frequently used while genome assembly
List of tools frequently used while genome assembly: I have use...7.12-r1039) I have used the following polishing tools Racon (v. not availab...olish (v. 0.8.3) I have used the following tools to assess genome assembly cha...1958 days ago
Understanding reads mapping and flags !
Linear Alignment: An alignment of a read to a single reference sequence that may include insertions, deletions, skips and clipping, but may not include...1865 days ago
Software for genome assembly !
List of bioinformatics tools/Software Website References for genome assembly: 1 Falcon https://github.com/PacificBiosciences/pb-assembly 2 Canu assembler http://canu.readth...1372 days ago
10 NGS services companies around the globe !
The global NGS services market is expected to reach USD 13.1 billion by 202...ion sequencing technologies; and bioservices services, including bioservices tools, pipelines and workflows, compute re...1287 days ago
Bioinformatics tools for telomere to telomere assembly !
...TI3 – an automated pipeline for the classification of lon...of data and the preprocessing pipeline (Rocío Amorín d...29)● svpack – tools for filtering, comparing, and...eer-advice-and-bioinformatics-tools-at-smrt-leiden-2021/1020 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the...this is what the Illumina sequencing pipeline creates. This will henceforth...assembly checking and assembly metric tools:QUAST - Quality assessment to...from read mappings. Genome finishing tools:Semi-automated gap fillers:Ga...1232 days ago
Run bash script in Perl program !
BioPerl is a compilation of Perl modules that can be used to build bioinformatics-relat...is used, for example, in the development of source codes, standalone software/tools, and algorithms in bioinforma...665 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detecti...WGD. I searched for the keyword "wgd pipeline" and found the following: Ge...https:// github.com/MaoYafei/GenoDup-Pipelinehttps://peerj.com/articles/630...p:// bioinformatics.psb.ugent.be /webtools/i-adhore/licensing/Agree to t...1183 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH...e, W. S. & Berriman, M. Nucleic Acids Res. 39, e57 (2011). SAMtools: The Sequence Alignment/Map format and SAMtools. Li, H. et al. Bioinformatics...1075 days ago