Results for "Gene Expression Analysis"
Blogs
...-DMAKE_OS_RELEASE='"4.4.0-128-generic"' -DMAKE_RELEASE='"3.0"' -...Spines -fopenmp -c ./analysis/AACodons.cc -o obj/analysis/AACodons.o g++ -W -Wall -Wno-...n signed and unsigned integer expressions [-Wsign-compare] for (i=...nalysis/NonRedKmerTable.o obj/analysis/sequenceUtil.o obj/analysis/s...2160 days ago
List of motif discovery tools !
In genetics, a sequence motif is a nucleotide or amino-acid se...e Online druG 3D conformation generator Produce 3D conformations of...n ANnotation Diagram ORiented Analysis Find information about prote...oach to protein-binding sites analysis Predict the location of pote...2020 days ago
- AWK is a standard tool on every POSIX-compliant UNIX system. It’s like...n, there's the super useful regular expression match if ("foo" ~ "^fo+$...ny of which rely heavily on regular expressions. # Search and replace...ally a true/false test. The regular expressi...
1863 days ago
Software for genome assembly !
List of bioinformatics tools/Software Website References for genome assembly: 1 Falcon ht...N error correction https://github.com/broadinstitute/pilon/wiki 9 BUSCO single copy gene mar...1371 days ago
10 NGS services companies around the globe !
...e company offer comprehensive genetic testing solutions that hel...areas. It also provides next generation sequencing services inc...ome research, and bioservices analysis system consulting services. M...encing of bacteria and phage, gene synthesis, DNA cloning, genomics...1286 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling eval...g data to genotype a wide spectrum of genetic variation (Tobias Marschal...RIK)● pbaa (PacBio Amplicon Analysis)...s from genomic samples to cluster and generate high-quality consensus sequen...1019 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembly method for small to me...icine to classify, diagnose and eventually improve genetic di.../annotation-service/ Frequent command use for the analysis are at: https://bioinformati...1231 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity analysis, and the other is based o...ave posted articles about the analysis p...or point wgd syn --feature gene --gene_attribute ID \ -ks wgd_ksd...l-vs-ALl + MCL classification analysis. mix: Hybrid modeling of Ks...1182 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Nastouli E, Keane JA, Kellam P, Otto TD. Bioinformatics. 2015...1074 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming...of multiple variant calling and consensus sequence generation...ift) Consensus assessment report (QUAST) Lineage analysis (Pangolin) Clade assignment,...904 days ago
