722 days ago
Understanding DUMP files from NCBI Taxonomy database !
*.dmp files are bcp-like dump from GenBank taxonomy database General information. Field term...; hidden subtree root flag (1 or 0) -- 1 if this subtree has no sequence d...713 days ago
Must read paper and books in evolution biology !
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with resources for e...1b. Sachidandam et al. 2001. A map of human genome sequence...ourable gene. Genet. Res. 23: 23-35. Understanding sequence v...630 days ago
Tools for Sequence translation !
BOrf - https://github.com/betsig/borf CodAn - https://github.com/pedronachtigall/CodAn EMBOSS-Sixpack - https://www.ebi.ac.uk/Tools/st/emb...597 days ago
591 days ago
Bioinformatics tools to explore SSRs in genomes !
There are several bioinformatics tools that can be used to explore Simple Sequence Repeats (SSRs), which are also kno...tool that can identify SSRs in DNA sequences. It can be used to analyze n...dentifies SSRs in both DNA and RNA sequences...tool that can identify SSRs in DNA sequences...478 days ago
Common methods to discover tandem repeats
Tandem repeats are DNA sequences that are repeated in a contiguous manner in the genome. These sequences are often used as genetic ma...that identifies tandem repeats in DNA sequences...hat can identify tandem repeats in DNA sequences....476 days ago
Common steps for reads mapping !
Mapping reads to a reference genome is an essential step in many types of...reference genome needs to be indexed. This involves creating an index of the genome sequence t...476 days ago
Steps to find palindrome in genomes !
Palindromes are sequences of nucleotides that read the...romes is to search the genome sequence directly for palindromic sequ...regular expressions or string algorithms. This approach can be usefu...the discovery of palindromic sequences in genomes can be accomplished...476 days ago
Calculate the significance of the difference between two trends
To calculate the significance of the difference...oups (non-parametric) ANOVA aov() or anova() Compare multiple...s (parametric) Kruskal-Wallis kruskal.test() Compare multiple g...471 days ago