Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic se...ce-saving solution for raw sequencing data, Bioinformatics, 20...k-mer-based compression of sequencing data, Scientific Reports,&nbs...i, L., Disk-based compression of data from genome sequencing, ...911 days ago
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List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Functional Annota...gene indices of human, mouse, Arabidopsis, Zebrafish, Drosophila...MBGD -- Microbial genome database for comparative analysis...hensive suite of programs and databases for comparative analysis...724 days ago
Understanding DUMP files from NCBI Taxonomy database !
*.dmp files are bcp-like dump from GenBank taxonomy database General information. Fi...t node id in GenBank taxonomy database rank -- rank of t...this subtree has no sequence data yet comments -- free-...med_id -- unique id in PubMed database (0 if not in PubMed) med...707 days ago
Interesting Bioinformatics Resources !
1. a reproducible workflow. https://www.youtube.com/watch...lse 3. Common-sense approaches to sharing tabular data alongside publication ht...e/article/pii/S2666389921002300 4. A Reproducible Data Analysis Workflow with R Mark...588 days ago
Common steps for reads mapping !
Mapping reads to a reference...that is appropriate for your type of data and research question. I...indexing tools. Prepare the read data: The reads should be in a for...pically involves specifying the input data, reference genome, and output...470 days ago
Calculate the significance of the difference between two trends
To calculate the significance of the difference between two...le H1 might be that there is a significant difference. Collect data on the two trends. Make sure that the data is independent, normally dist...465 days ago
Free Books on Machine Learning and Artificial Intelligent !
An Introduction to Statistical LearningThis boo...wishes to use contemporary tools for data analysis. https://hastie.su....ains/ISLR2/ISLRv2_website.pdf Python Data Science HandbookYou’ll...aning, manipulating, and transforming data — or building machine l...464 days ago
Bioinformatic tools for pathogens informatics at CVR
Novel sequencing and analytical...ped @ CVR. DIGS The database-integrated genome-screeni...silico screening of sequence databases using BLAST in combinati...ly tailored towards viral HTS data sets and the analysis of the...able next generation sequence data sets (Illumina). ViCTree...13 days ago