Useful links to therapy, disease, drug and drug-target network data:
Useful links to therapy, disease, drug and drug-target network data: DrugBank: a bioinformatics- che...s resource combining detailed drug data w...ca/ Drug-Target Network: network data...Ddb: Thomson Investigational drugs database in...t.ac.kr/~parkkw/Lnet/ TDR Targets Datab...1483 days ago
Perl one-liner for beginners !
I often use the following arguments to perl: -e Makes the line of code be executed instead of...rCase.txt > textwithoutuppercase.txt; Print only the second column of the data...1430 days ago
10 NGS services companies around the globe !
The global NGS services market&...ustralia, and the Middle-East &Africa through its subsidiarie...mer, Inc. offers its products & services and solutions for th...workflows, compute resources, data analysis reports, and case stu...ices such as oligo synthesis, database co...1309 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and var...ount information from raw, short-read sequencing data...-read transcripts that can assess the quality of data and th...HC typing and other low-complexity gene amplicon data;...1041 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe...er therapies. Similarly, pathogens study...for infectious diseases. Raw NGS dataReads c...standard is like. If required, raw data cleanup/quality trimming. Choo...s details for the remainder of the study now. Few stuff you can n...1254 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity analysis, and the other is based on the Ks d...envs/wgd/ tar -zxvf i-adhore-3.0.01.tar.gzcd i-adhore-3.0.01mkdir -p build &&...1205 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RN...exact alignments. Wood, D. E. & Salzberg, S. L. Genome Biol....language and environment for statistical computing. R Core Team (2013). R Foundation for Statistical Computing, Vienna, Austria. U...trimmer for Illumina Sequence Data. Bolger, A. M., Lohse, M. &...1096 days ago
Basic Structure of Snakemake Pipeline Run !
/user/snakemake-demo$ ls config.json data envs scripts slurm-240702.out Snakefile data...983 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read...Mtools) Primer sequence removal (iVar; amplicon data...Var variants and consensus; default for amplicon data || BCF...vo assembly Primer trimming (Cutadapt; amplicon data...926 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequenci...ore - a space-saving solution for raw sequencing data,...QSqueezer: k-mer-based compression of sequencing data, ...S., Roguski, L., Disk-based compression of data...913 days ago