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Install ImageMagick from Unix Source
ImageMagick builds on a variety of Unix and Unix-like operating systems including Linux, Sol...er -lc should be explicitly linked in... nochecking dynamic l...eschecking for j0... yeschecking for j1... yeschecking for ll...ImageMagick-7/www/api/MagickWand/usr/bin/install -c -m 644 ./...2198 days ago
chromoMap-An R package for Interactive visualization and mapping of human chromosomes
chromoMap is an R package that provides interactive, configurable and elegant graphics visualizati...e "chromosome heatmap" that, in addition to mapping elements,...ctical to visualize each element on the same plot. But chromo...w). Not ony that, the plots can be saved as HTML documents th...2193 days ago
- Download this https://github.com/trinityrnaseq/trinityrnaseq/releases/tag/Trinity-v2.6.6 ➜ cd trinityrnaseq-Trinity-v2.6.6 ➜...if (seq_region.size() < kmer_length) { co...pines -fopenmp -c ./analysis/BreakTransByPairs.cc -o...
2185 days ago
Installing Salmon for Trinity !
➜ trinityrnaseq-Trinity-v2.6.6 git:(master) ✗ conda install salmon Solving environment: done ## Package Plan ## e...0 1.2 MB conda-forge ----------------...############### | 100% salmon-0.10.2 | 3.7 MB | ###...2185 days ago
Converting a VCF into a FASTA given some reference !
Samtools/BCFtools (Heng Li) provides a Perl script vcfutils.pl which does this, the function vcf2fq (lines 469-528)...ript has been modified by others to convert InDels as well, e.g. ...q> https://github.com/gringer/bioinfscripts/blob/master/vcf2fq.pl...2168 days ago
Julia Programming Language, a Python and R rival
Big data has grown to become one of the most lucrative fields. In fact, data scientists are som...nal techniques is not a walk in the park. This is why most da...native to these programming languages. For instance, it utili...syntax makes it easier to learn than Python. 3. ParallelismA...2132 days ago
Setting python version as default on Linux
If you have a later version than 2.6 you'll need to set 2.6 as the default Python. Later versions would be 2.7...to execute the following commands: sudo apt-get inst...low you to choose which version of python to use by default....se packages, execute the commands at the top to set python2.6...2122 days ago
List of motif discovery tools !
In genetics, a sequence motif is a nucleotide or amino-acid sequence pattern that is widespread and has, o...tomatically calculate evolutionary conservation scores of key...tifs, protein families, and functional sites. KFC -- Kno...er:P~PEP -- a database of human protein protein interactions...2045 days ago
How to set up SSH on Ubuntu 18.04
SSH, also known as Secure Shell or Secure Socket Shell, is a network protocol that gives users, particularly system administrators, a secure way to acc...uite of utilities that implement the SSH protocol. Here are...assword --> you should be in --> in /home/user/.ssh/co...2043 days ago
Understating pacbio reads name !
...──────────4────────────────┘└5┘└6┘└7┘└────8────┘└─9─┘└10┘ "m" = movie Time of Run Start (yymmdd_hhmmss) Instru..., used in earlier version of RS) Part Number (usually "p0", "X0" when using expired reagents) ZMW...2042 days ago
