753 days ago
List of comparative genomics resources !
...nimalQTLdb -- a livestock QTL database tool set for positional QTL information mining and beyond Search for publ...coDing Orthologous Regions A database resource of developmentally...MBGD -- Microbial genome database fo...hensive suite of programs and databases for comparative analysis...719 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
1. *Nick Barton:* - The textbook "Evolution" by Nick Bar..., J. A., Goldstein, D. B., & Patel, N. H. (2007). Evolutio...A molecular approach to the study of genic heterozygosity in na...ng for selection 1. McDonald & Kreitman. 1991. Adaptive prot...719 days ago
Finding a mimicry game for teaching on-line and mentioned general resources
Mimicry and other resources Mimicry games: Great Heliconius game: http://heliconius.org/evolvi...l resources The always popular Populus: https://cbs.umn.edu/populus/overview Drift &...719 days ago
Understanding DUMP files from NCBI Taxonomy database !
*.dmp files are bcp-like dump from GenBank taxonomy database General information. Field te...x_id -- node id in GenBank taxonomy databa...parent node id in GenBank taxonomy datab...- 1 if this subtree has no sequence data yet &...y pubmed_id -- unique id in PubMed datab...702 days ago
Useful link to teach evolution !
Mimicry and other resources Mimicry games: Great Heliconius game: http://heliconius.org/evolvi...l resources The always popular Populus: https://cbs.umn.edu/populus/overview Drift &...619 days ago
Must read paper and books in evolution biology !
1. *Nick Barton:* - The textbook "Evolution" by Nick Bar..., J. A., Goldstein, D. B., & Patel, N. H. (2007). Evolutio...A molecular approach to the study of genic heterozygosity in na...ng for selection 1. McDonald & Kreitman. 1991. Adaptive prot...619 days ago
Interesting Bioinformatics Resources !
1. a reproducible workflow. https://www.youtube.com/watch?v=s...0?login=false 3. Common-sense approaches to sharing tabular data alongs...com/science/article/pii/S2666389921002300 4. A Reproducible Data...583 days ago
Common methods to discover tandem repeats
Tandem repeats are DNA sequence...otide and protein sequences. The tool uses a stati...t works by comparing the input sequence to a database of known repeats and then identi...s any tandem repeats that match those in the datab...465 days ago
Common steps for reads mapping !
Mapping reads to a reference genome...se a mapper that is appropriate for your type of data...their own indexing tools. Prepare the read data: The r...sed, but typically involves specifying the input data,...465 days ago