Frequently used bioinformatics tools for viral genome analysis !
...nomic sequence classification using exact alignments. Wood, D. E. & Salzberg, S. L. Genome Biol. 15, R46 (2014). MUMmer: Versatile and open software for comparing large genomes...1102 days ago
Bioinformatics tools for telomere to telomere assembly !
...ng pipeline (Rocío Amorín de Hegedüs @rocioadh)● tama (Transcriptome Annotation by Modular Algorithms) – software designed for processing Iso...1047 days ago
Basic Structure of Snakemake Pipeline Run !
...-dry-run User can execute rules of interest. snakemake --dry-run all VS. snakemake --dry-run call VS. snakemake --dry-run bwa Run the snakemake file in...989 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignm...932 days ago
Useful Bioinformatics Analysis Tools !
...ltiple sequence alignments of proteins. • Deorowicz, S., Walczyszyn, J., Debudaj-Grabysz,...lowing queries for a collection of sequencing reads. • Kowalski, T., Grabowski, Sz., Deor...918 days ago
List of comparative genomics resources !
...nts. CoCoa -- COefficient of COAncestry software Find information about the...nomics of prokaryotes made easy A web-based software/database system aimed at an...noopCGH -- Comparative Genomic Hybridization software Visualize and explore comp...732 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
...J.A., N.H. Barton, and M. Turelli. 1997. A critique of Wright's shifting balance theory of evolution. Evolution 51: 643-671. 3. Barton. 2016. Sewall Wright on Evolution in Mend...732 days ago
Finding a mimicry game for teaching on-line and mentioned general resources
....edu/netlogo/models/BugHuntCamouflage) Peppered moth game: https://askabiologist.asu.edu/peppered-moths-game/play.html General resources The always popular Populus: https://c...732 days ago
724 days ago
Useful link to teach evolution !
....edu/netlogo/models/BugHuntCamouflage) Peppered moth game: https://askabiologist.asu.edu/peppered-moths-game/play.html General resources The always popular Populus: https://c...633 days ago